RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 IFI16Q16666 785 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 SLC9A4Q6AI14 798 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 ALG1LQ6GMV1 187 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 LIPIQ6XZB0 460 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 TMPRSS7Q7RTY8 843 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 PARGQ86W56 976 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 CBARPQ8N350 705 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 BBS5Q8N3I7 341 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 NSMCE1Q8WV22 266 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 C1QTNF7Q9BXJ2 289 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 NT5MQ9NPB1 228 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 DNAJC28Q9NX36 388 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 B4GALT6Q9UBX8 382 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 PCDHGA1Q9Y5H4 931 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 ALG6Q9Y672 507 aa10.33□□□□□ -0.76
CCDC88C-206ENST00000553437 DSPP15924 2871 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 A0A1W2PQ67 120 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 RCCD1A6NED2 376 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 SOWAHDA6NJG2 315 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 A8MX80 341 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 SCAMP1O15126 338 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 FZD6O60353 706 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 RECQL5O94762 991 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PGLSO95336 258 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PROS1P07225 676 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 HOXB3P14651 431 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 MX2P20592 715 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 ACADVLP49748 655 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 HNRNPKP61978 463 aaKnown RBP eCLIP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PPIDQ08752 370 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 NIPAL4Q0D2K0 466 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PTK2BQ14289 1009 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 GSE1Q14687 1217 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PTPRRQ15256 657 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 SMAD1Q15797 465 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 ZFYVE27Q5T4F4 411 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 TIGD7Q6NT04 549 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 MFSD7Q6UXD7 560 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 UNQ6494/PRO21346Q6UXR6 183 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 CCNI2Q6ZMN8 369 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 RHOT1Q8IXI2 618 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PLA2G15Q8NCC3 412 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 OR4C6Q8NH72 309 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 ARRDC2Q8TBH0 407 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PIH1D2Q8WWB5 315 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 RNF25Q96BH1 459 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 HDAC11Q96DB2 347 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 COQ10AQ96MF6 247 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 MCCC1Q96RQ3 725 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 SEMA3CQ99985 751 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 TCEAL2Q9H3H9 227 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 GOLPH3Q9H4A6 298 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 RBM22Q9NW64 420 aaKnown RBP eCLIP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 AMACRQ9UHK6 382 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 SALL4Q9UJQ4 1053 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PHTF1Q9UMS5 762 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 REXO2Q9Y3B8 237 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 PPIL1Q9Y3C6 166 aa10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 EPN1Q9Y6I3 576 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-206ENST00000553437 BPTFQ12830 3046 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 A0A0A6YYK5 440 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 LY6G6EA0A0G2JKS1 128 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 SPOPO43791 374 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 LZTS3O60299 673 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 RFPL3O75679 317 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 NEBLO76041 1014 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 HEXIM1O94992 359 aaKnown RBP10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 NDUFA10O95299 355 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CPP00450 1065 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 PRLP01236 227 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 KRT1P04264 644 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CAPNS1P04632 268 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 HLA-DQB2P05538 268 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 PDHA1P08559 390 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 C1SP09871 688 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CCNB1P14635 433 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 JUNDP17535 347 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CKMT2P17540 419 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CES1P23141 567 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 ACP1P24666 158 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CYLC1P35663 651 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CDKN2BP42772 138 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 NOP2P46087 812 aaKnown RBP10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 PEX5P50542 639 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 DSC2Q02487 901 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 INPP5AQ14642 412 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 SPA17Q15506 151 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CNGA3Q16281 694 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 FAM182AQ5T1J6 154 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 DHRS13Q6UX07 377 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 RAD9BQ6WBX8 426 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 MACC1Q6ZN28 852 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 NYAP1Q6ZVC0 841 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 MARCH9Q86YJ5 346 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 TMTC1Q8IUR5 882 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CCDC13Q8IYE1 715 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 RBFAQ8N0V3 343 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 PELI3Q8N2H9 469 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 CNTD1Q8N815 330 aa10.31□□□□□ -0.76
CCDC88C-206ENST00000553437 KDF1Q8NAX2 398 aaPredicted RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms