RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 POF1BQ8WVV4 589 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 SKA1Q96BD8 255 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 RMDN1Q96DB5 314 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 GDF15Q99988 308 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 ADGRE3Q9BY15 652 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 SAR1AQ9NR31 198 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 CORO1CQ9ULV4 474 aaPredicted RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 TMEM114B3SHH9 223 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 TRIM13O60858 407 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 GOT2P00505 430 aaKnown RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 OGNP20774 298 aaKnown RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 ZNF140P52738 457 aaPredicted RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 ZNF789Q5FWF6 425 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 LRRC8EQ6NSJ5 796 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 MRNIPQ6NTE8 343 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 RNF135Q8IUD6 432 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 TMEM151AQ8N4L1 468 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 SCG3Q8WXD2 468 aaKnown RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 C2orf49Q9BVC5 232 aaPredicted RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 WWP1Q9H0M0 922 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 PRO3102Q9H379 93 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 TLR9Q9NR96 1032 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 CCDC162PA2VCL2 907 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 GJA1P17302 382 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 HOXB8P17481 243 aaPredicted RBP26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 RHOAP61586 193 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 RBM20Q5T481 1227 aaKnown RBP26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 CLNKQ7Z7G1 428 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 WDR75Q8IWA0 830 aaKnown RBP26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 PIWIL2Q8TC59 973 aaKnown RBP26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 SCYL1Q96KG9 808 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 GPR78Q96P69 363 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 FAM96AQ9H5X1 160 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 OXSMQ9NWU1 459 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 KIAA1522Q9P206 1035 aaPredicted RBP26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 MARCH4Q9P2E8 410 aaPredicted RBP26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 SPO11Q9Y5K1 396 aa26.43■■□□□ 1.82
CCDC88C-205ENST00000553403 TRIOBPQ9H2D6 2365 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 CCL22O00626 93 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 NRG2O14511 850 aaPredicted RBP26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 CD3EAPO15446 510 aaKnown RBP26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 PIRTP0C851 137 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 BMP8BP34820 402 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 ZBTB16Q05516 673 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 HECTD2Q5U5R9 776 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 RETSATQ6NUM9 610 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 LPCAT1Q8NF37 534 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 OR13C4Q8NGS5 318 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 FIBINQ8TAL6 211 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 ACDQ96AP0 544 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 CDKN2AIPNLQ96HQ2 116 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 TUBB6Q9BUF5 446 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 STN1Q9H668 368 aaKnown RBP26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 DNAJC16Q9Y2G8 782 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 PCDHGC4Q9Y5F7 938 aa26.42■■□□□ 1.82
CCDC88C-205ENST00000553403 OR51F1A6NGY5 319 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 TARM1B6A8C7 271 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 LYPLA1O75608 230 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 AP1S1P61966 158 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 TRAF2Q12933 501 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 FAM91A1Q658Y4 838 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 ASRGL1Q7L266 308 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 GLT6D1Q7Z4J2 308 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 TBC1D1Q86TI0 1168 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 METTL3Q86U44 580 aaKnown RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 FSTL5Q8N475 847 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 OR4L1Q8NH43 312 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 TTC8Q8TAM2 541 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 SHKBP1Q8TBC3 707 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 NXNL1Q96CM4 212 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 SORT1Q99523 831 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 OLFM1Q99784 485 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 SLC40A1Q9NP59 571 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 CATSPERZQ9NTU4 200 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 VWA7Q9Y334 891 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 MTCL1Q9Y4B5 1905 aaKnown RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 CXorf51AA0A1B0GTR3 108 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 C2orf81A6NN90 581 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 SOBPA7XYQ1 873 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 ANKRD66B4E2M5 251 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 PDHA1P08559 390 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 SBK3P0C264 359 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 PTPN2P17706 415 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 SERPINB3P29508 390 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 HOXA9P31269 272 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 CCR2P41597 374 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 ZNF460Q14592 562 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 HSF5Q4G112 596 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 GPR158Q5T848 1215 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 FAM45BPQ6NSW5 357 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 SDCCAG8Q86SQ7 713 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 APCDD1Q8J025 514 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 FAM45AQ8TCE6 357 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 USP13Q92995 863 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 KLHL29Q96CT2 875 aa26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 SUDS3Q9H7L9 328 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-205ENST00000553403 PALM2-AKAP2B1ALY0 433 aaPredicted RBP26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 BUD23O43709 281 aaKnown RBP26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 RASSF9O75901 435 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 CYBBP04839 570 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms