RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ATP6AP2O75787 350 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 MT-CO1P00395 513 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 MERTKQ12866 999 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 SEPT6Q14141 434 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 PCBP1Q15365 356 aaKnown RBP eCLIP17.63■□□□□ 0.41
SYNE3-202ENST00000553340 CLEC6AQ6EIG7 209 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 RWDD4Q6NW29 188 aaKnown RBP17.63■□□□□ 0.41
SYNE3-202ENST00000553340 FUNDC1Q8IVP5 155 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 SMYD1Q8NB12 490 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 TSPAN18Q96SJ8 248 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 OLFM1Q99784 485 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 HOPXQ9BPY8 73 aaPredicted RBP17.63■□□□□ 0.41
SYNE3-202ENST00000553340 PRKD2Q9BZL6 878 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 RNF39Q9H2S5 420 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 VTA1Q9NP79 307 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 GPRC5DQ9NZD1 345 aa17.63■□□□□ 0.41
SYNE3-202ENST00000553340 GMPR2Q9P2T1 348 aaKnown RBP17.63■□□□□ 0.41
SYNE3-202ENST00000553340 ADCYAP1R1P41586 468 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 ACAP2Q15057 778 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 XKR4Q5GH76 650 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 KIAA0319Q5VV43 1072 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 Q6ZNX1 250 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 GPRIN1Q7Z2K8 1008 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 PATL1Q86TB9 770 aaKnown RBP17.62■□□□□ 0.41
SYNE3-202ENST00000553340 FAM110BQ8TC76 370 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 RNF34Q969K3 372 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 TSPAN17Q96FV3 270 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 SMOQ99835 787 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 DCUN1D5Q9BTE7 237 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 C9orf16Q9BUW7 83 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 GSTO2Q9H4Y5 243 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 FBRSL1Q9HCM7 1045 aaKnown RBP17.62■□□□□ 0.41
SYNE3-202ENST00000553340 PIN4Q9Y237 131 aaKnown RBP17.62■□□□□ 0.41
SYNE3-202ENST00000553340 RNF103-CHMP3A0A140T963 221 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 DLGAP1O14490 977 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 PMPCBO75439 489 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 DARSP14868 501 aaKnown RBP17.62■□□□□ 0.41
SYNE3-202ENST00000553340 IMPDH1P20839 514 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 FASP25445 335 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 PSMA4P25789 261 aaKnown RBP17.62■□□□□ 0.41
SYNE3-202ENST00000553340 ATP6V0D1P61421 351 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 KIF19Q2TAC6 998 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 PRMT9Q6P2P2 845 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 CTU1Q7Z7A3 348 aaKnown RBP17.62■□□□□ 0.41
SYNE3-202ENST00000553340 LZTR1Q8N653 840 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 PPP1R2P1Q96PQ5 205 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 GPATCH1Q9BRR8 931 aaKnown RBP17.62■□□□□ 0.41
SYNE3-202ENST00000553340 AGPAT4Q9NRZ5 378 aa17.62■□□□□ 0.41
SYNE3-202ENST00000553340 POLR2AP24928 1970 aaKnown RBP17.62■□□□□ 0.41
SYNE3-202ENST00000553340 NME4O00746 187 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 UBFD1O14562 309 aaKnown RBP17.61■□□□□ 0.41
SYNE3-202ENST00000553340 GABRDO14764 452 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 SUPT7LO94864 414 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 GPX3P22352 226 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 ADRA1AP35348 466 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 CLCN5P51795 746 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 RETREG3Q86VR2 466 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 SPPL2CQ8IUH8 684 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 GABPB2Q8TAK5 448 aaPredicted RBP17.61■□□□□ 0.41
SYNE3-202ENST00000553340 CALML6Q8TD86 181 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 C19orf60Q96EN9 201 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 SLC45A3Q96JT2 553 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 IL12RB2Q99665 862 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 CRTAC1Q9NQ79 661 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 SFMBT1Q9UHJ3 866 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 CDH7Q9ULB5 785 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 CDC14AQ9UNH5 594 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 NDUFAF1Q9Y375 327 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 A0A0J9YYE9 177 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 CXCL11O14625 94 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 SEC24DO94855 1032 aaPredicted RBP17.61■□□□□ 0.41
SYNE3-202ENST00000553340 AXLP30530 894 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 TTKP33981 857 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 RAB41Q5JT25 222 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 CYHR1Q6ZMK1 362 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 FAM35AQ86V20 835 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 EPHX4Q8IUS5 362 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 CXorf21Q9HAI6 301 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 IL1RL2Q9HB29 575 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 ABCD2Q9UBJ2 740 aa17.61■□□□□ 0.41
SYNE3-202ENST00000553340 FAM149AA5PLN7 773 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 TRIM64A6NGJ6 449 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 NR5A2O00482 541 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 HMOX2P30519 316 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 CTBSQ01459 385 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 BNIP2Q12982 314 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 SLC36A3Q495N2 470 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 ZNF789Q5FWF6 425 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 KDELC2Q7Z4H8 507 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 GOLM1Q8NBJ4 401 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 ZMIZ2Q8NF64 920 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 ZNF420Q8TAQ5 688 aaPredicted RBP17.6■□□□□ 0.41
SYNE3-202ENST00000553340 ZNF419Q96HQ0 510 aaPredicted RBP17.6■□□□□ 0.41
SYNE3-202ENST00000553340 UBXN10Q96LJ8 280 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 ATXN3LQ9H3M9 355 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 RRN3P2A6NIE6 340 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 GIPC1O14908 333 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 ALDOCP09972 364 aaKnown RBP17.6■□□□□ 0.41
SYNE3-202ENST00000553340 FAM163BP0C2L3 166 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 TSPAN8P19075 237 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms