RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 COPEO14579 308 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 SCAMP3O14828 347 aaKnown RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PSTPIP1O43586 416 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 ADAM23O75077 832 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PIAS1O75925 651 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 SORBS2O94875 1100 aaKnown RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 KLHL2O95198 593 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TBX18O95935 607 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PROCP04070 461 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CKMP06732 381 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 THRAP10827 490 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 ETS1P14921 441 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CDH5P33151 784 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 GPD2P43304 727 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 RXRGP48443 463 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 SLC18A2Q05940 514 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 C1QBPQ07021 282 aaKnown RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 FCHO2Q0JRZ9 810 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 MAMLD1Q13495 774 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 GK3PQ14409 553 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 GOLGA7BQ2TAP0 167 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CCDC153Q494R4 210 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TCHHL1Q5QJ38 904 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PPP1R2P3Q6NXS1 205 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 BMP8AQ7Z5Y6 402 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PIGZQ86VD9 579 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 RHOT1Q8IXI2 618 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PALM2Q8IXS6 379 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 KATNAL2Q8IYT4 538 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 LZTR1Q8N653 840 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 ANKRD52Q8NB46 1076 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 FLCNQ8NFG4 579 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 TSPAN14Q8NG11 270 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PPP4R1Q8TF05 950 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 NDRG1Q92597 394 aaKnown RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 BORCS5Q969J3 196 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 SERAC1Q96JX3 654 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 DHRS1Q96LJ7 313 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 SLITRK1Q96PX8 696 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 NUF2Q9BZD4 464 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 DNAI2Q9GZS0 605 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 CCSER2Q9H7U1 834 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 NMUR1Q9HB89 426 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 GTSE1Q9NYZ3 720 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 HESX1Q9UBX0 185 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 MARCOQ9UEW3 520 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 NUDT5Q9UKK9 219 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 DNPEPQ9ULA0 475 aa7.73□□□□□ -1.17
LIMA1-216ENST00000552909 GPC6Q9Y625 555 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-216ENST00000552909 PATJQ8NI35 1801 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 MYOFQ9NZM1 2061 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 KIF26AQ9ULI4 1882 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-216ENST00000552909 GOLGA8TH3BQL2 631 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 PIK3R2O00459 728 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 DPYSL4O14531 572 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 GABBR2O75899 941 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 PROSCO94903 275 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 CALB1P05937 261 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 TFPTP0C1Z6 253 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 ZDHHC11BP0C7U3 371 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 S100A1P23297 94 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 NFKBIAP25963 317 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 DDX6P26196 483 aaKnown RBP eCLIP7.72□□□□□ -1.17
LIMA1-216ENST00000552909 WEE1P30291 646 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 HMOX2P30519 316 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 SOX9P48436 509 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 WASHC5Q12768 1159 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 SEPT6Q14141 434 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 PKDCCQ504Y2 493 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 RWDD4Q6NW29 188 aaKnown RBP7.72□□□□□ -1.17
LIMA1-216ENST00000552909 DRICH1Q6PGQ1 229 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-216ENST00000552909 PCGF5Q86SE9 256 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 HPS6Q86YV9 775 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 TMEM126BQ8IUX1 230 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 FBXW8Q8N3Y1 598 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 FBXL6Q8N531 539 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 CELF5Q8N6W0 485 aaKnown RBP7.72□□□□□ -1.17
LIMA1-216ENST00000552909 DDHD1Q8NEL9 900 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 EXD1Q8NHP7 514 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 BPIFB1Q8TDL5 484 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 SRPK1Q96SB4 655 aaKnown RBP7.72□□□□□ -1.17
LIMA1-216ENST00000552909 HEPHQ9BQS7 1158 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 FOXQ1Q9C009 403 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 NACA2Q9H009 215 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 GKN1Q9NS71 199 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 PARVAQ9NVD7 372 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 SMPD4Q9NXE4 827 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 UTP6Q9NYH9 597 aaKnown RBP7.72□□□□□ -1.17
LIMA1-216ENST00000552909 TJP2Q9UDY2 1190 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 MTF2Q9Y483 593 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-216ENST00000552909 USP3Q9Y6I4 520 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 ATG2BQ96BY7 2078 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 MYO16Q9Y6X6 1858 aa7.72□□□□□ -1.17
LIMA1-216ENST00000552909 TRAV19A0A0A6YYK7 116 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 STK25O00506 426 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 COCHO43405 550 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 INHBAP08476 426 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 USP17L7P0C7H9 530 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 CDH3P22223 829 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 GJC1P36383 396 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms