RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 HTR1AP08908 422 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 LMO2P25791 158 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 PTPN3P26045 913 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 GARSP41250 739 aaKnown RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CD151P48509 253 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 NDUFV1P49821 464 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CCT8P50990 548 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 RPS3AP61247 264 aaKnown RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 RBP5P82980 135 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 BFSP2Q13515 415 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 KCNJ8Q15842 424 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 ANO4Q32M45 955 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 INAVAQ3KP66 663 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 FBXO48Q5FWF7 155 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 RABL3Q5HYI8 236 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SPANXN3Q5MJ09 141 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 NIPAL1Q6NVV3 410 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 RWDD4Q6NW29 188 aaKnown RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM110Q86TL2 294 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 IFNEQ86WN2 208 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SIX6OS1Q8N1H7 587 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 MFSD2AQ8NA29 543 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 OR2T34Q8NGX1 318 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 OR2T3Q8NH03 318 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SPATA22Q8NHS9 363 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CENPIQ92674 756 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 HPS1Q92902 700 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 ALPK1Q96QP1 1244 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 OSMRQ99650 979 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 IL12RB2Q99665 862 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 GPR22Q99680 433 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CHST12Q9NRB3 414 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CCM2LQ9NUG4 571 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CMTM6Q9NX76 183 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 SNTG2Q9NY99 539 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 IFT80Q9P2H3 777 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 PIN4Q9Y237 131 aaKnown RBP4.88□□□□□ -1.63
LIMA1-214ENST00000552783 TSC22D4Q9Y3Q8 395 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 A0A0C4DFX4 3053 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 RLFQ13129 1914 aa4.88□□□□□ -1.63
LIMA1-214ENST00000552783 CFAP99D6REC4 459 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 LSM1O15116 133 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 NDUFB5O43674 189 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 HBP1O60381 514 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 NRP2O60462 931 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 E2F6O75461 281 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 CABYRO75952 493 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 MPOP05164 745 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 CYP2C9P11712 490 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 PABPC1P11940 636 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 IL7RP16871 459 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 ZFXP17010 805 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 CAPN3P20807 821 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 IGFBP6P24592 240 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 MAP4P27816 1152 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 ALDH4A1P30038 563 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 NR2C2P49116 596 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 CXCR3P49682 368 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 CDH13P55290 713 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 TAS2R39P59534 338 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 CLCQ05315 142 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 POU5F1BQ06416 359 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 PPP1R8Q12972 351 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 RGS21Q2M5E4 152 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 DPY19L1Q2PZI1 675 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 PAN2Q504Q3 1202 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 NOMO2Q5JPE7 1267 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 OTUD3Q5T2D3 398 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 RBM20Q5T481 1227 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 SYPL2Q5VXT5 272 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 KCTD11Q693B1 232 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 OTOP3Q7RTS5 596 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 ADGRG5Q8IZF4 528 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 PSD4Q8NDX1 1056 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 OR13F1Q8NGS4 319 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 TEX37Q96LM6 180 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 TSNARE1Q96NA8 513 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 SEZ6LQ9BYH1 1024 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 SIK2Q9H0K1 926 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 LRRC40Q9H9A6 602 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 SETD4Q9NVD3 440 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 EXD2Q9NVH0 621 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 PRMT7Q9NVM4 692 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 UTP6Q9NYH9 597 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 TRAF6Q9Y4K3 522 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 COL2A1P02458 1487 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 MYLKQ15746 1914 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 PSME4Q14997 1843 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 DHRS12A0PJE2 317 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 ZNF701M0R085 212 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 RSL1D1O76021 490 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 BEST1O76090 585 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 MT-CYBP00156 380 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 SNRPB2P08579 225 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 ARF4P18085 180 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 NFKB1P19838 968 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 TCEA1P23193 301 aaKnown RBP4.87□□□□□ -1.63
LIMA1-214ENST00000552783 HPCAL1P37235 193 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 ADCYAP1R1P41586 468 aa4.87□□□□□ -1.63
LIMA1-214ENST00000552783 IST1P53990 364 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms