RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 GSTA5Q7RTV2 222 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 ARHGAP12Q8IWW6 846 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 CCDC13Q8IYE1 715 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 OR8H2Q8N162 312 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 PARP16Q8N5Y8 322 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 PRSS3P2Q8NHM4 247 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 TMEM174Q8WUU8 243 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 MSI2Q96DH6 328 aaKnown RBP4.28□□□□□ -1.72
VPS29-205ENST00000548539 ERP27Q96DN0 273 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 C1orf74Q96LT6 269 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 MAP7D2Q96T17 732 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 PRSS22Q9GZN4 317 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 NPFFR1Q9GZQ6 430 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 PLEKHA4Q9H4M7 779 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 MAP6D1Q9H9H5 199 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 BPIFA1Q9NP55 256 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 ASAH2Q9NR71 780 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 DLGAP2Q9P1A6 1054 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 NDRG3Q9UGV2 375 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 POLG2Q9UHN1 485 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.28□□□□□ -1.72
VPS29-205ENST00000548539 RPS6KL1Q9Y6S9 549 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 A3GALT2U3KPV4 340 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 ZNF814B7Z6K7 855 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 RGS11O94810 467 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 ETFAP13804 333 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 GCH1P30793 250 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 KRT20P35900 424 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 AVPR1AP37288 418 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 GABRB2P47870 512 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 CDH8P55286 799 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 CDH12P55289 794 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 ITGADQ13349 1161 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 MTX1Q13505 466 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 ACVR2BQ13705 512 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 CRYMQ14894 314 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 INPP5JQ15735 1006 aaPredicted RBP4.27□□□□□ -1.73
VPS29-205ENST00000548539 PLEKHO1Q53GL0 409 aaPredicted RBP4.27□□□□□ -1.73
VPS29-205ENST00000548539 HEPHL1Q6MZM0 1159 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 TMEM154Q6P9G4 183 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 QSOX2Q6ZRP7 698 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 CHST9Q7L1S5 443 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 MEPCEQ7L2J0 689 aaKnown RBP4.27□□□□□ -1.73
VPS29-205ENST00000548539 GALNT5Q7Z7M9 940 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 HAPLN4Q86UW8 402 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 DENND6AQ8IWF6 608 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 RPAP2Q8IXW5 612 aaPredicted RBP4.27□□□□□ -1.73
VPS29-205ENST00000548539 SLC35F3Q8IY50 421 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 CCDC105Q8IYK2 499 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 ZDHHC23Q8IYP9 409 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 TAGAPQ8N103 731 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 MCPH1Q8NEM0 835 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 NSMCE1Q8WV22 266 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 POMGNT1Q8WZA1 660 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 CDT1Q9H211 546 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 MAGEE1Q9HCI5 957 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 ABI3Q9P2A4 366 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 RPS6KA6Q9UK32 745 aa4.27□□□□□ -1.73
VPS29-205ENST00000548539 A0A0U1RQF3 1178 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 TMEM272A0A1B0GTI8 110 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 A0A1W2PQ09 198 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 TLX3O43711 291 aaPredicted RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 KLK8O60259 260 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 TSPAN9O75954 239 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 OR2C1O95371 312 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 IPO7O95373 1038 aaKnown RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 MMP3P08254 477 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 CDH2P19022 906 aaPredicted RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 DCTDP32321 178 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 SHMT1P34896 483 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 UBA7P41226 1012 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 CLCN3P51790 818 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 LINC00205P59089 165 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 PSMC6P62333 389 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 SORDQ00796 357 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 NIPAL4Q0D2K0 466 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 IRF3Q14653 427 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 LPIN1Q14693 890 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 DRAP1Q14919 205 aaPredicted RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 TRIP6Q15654 476 aaKnown RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 SOWAHAQ2M3V2 549 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 TCTN1Q2MV58 587 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 CXorf66Q5JRM2 361 aaPredicted RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 MFSD4BQ5TF39 518 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 SHC4Q6S5L8 630 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 TMCO3Q6UWJ1 677 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 DEF8Q6ZN54 512 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 CLEC17AQ6ZS10 378 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 CAMK1DQ8IU85 385 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 ZBTB2Q8N680 514 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 NEK9Q8TD19 979 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 GPT2Q8TD30 523 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 TMEM18Q96B42 140 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 ZNF333Q96JL9 665 aa4.26□□□□□ -1.73
VPS29-205ENST00000548539 WDR77Q9BQA1 342 aaPredicted RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 MAK16Q9BXY0 300 aaKnown RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 RANGRFQ9HD47 186 aaPredicted RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 DDX4Q9NQI0 724 aaKnown RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 TRNAU1APQ9NX07 287 aaKnown RBP4.26□□□□□ -1.73
VPS29-205ENST00000548539 FAM237AA0A1B0GTK4 181 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms