RNA–Protein interactions for RNA: ENST00000548379.5

PTCH1-216, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 548 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-216ENST00000548379 DHX40Q8IX18 779 aaKnown RBP4.28□□□□□ -1.72
PTCH1-216ENST00000548379 TEX45Q8NA69 505 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 TMEM116Q8NCL8 245 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 RASSF8Q8NHQ8 419 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 MPLKIPQ8TAP9 179 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 TMEM163Q8TC26 289 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 NSUN4Q96CB9 384 aaKnown RBP4.28□□□□□ -1.72
PTCH1-216ENST00000548379 WDR77Q9BQA1 342 aaPredicted RBP4.28□□□□□ -1.72
PTCH1-216ENST00000548379 HCFC1R1Q9NWW0 138 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 ANKRD10Q9NXR5 420 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 GPR34Q9UPC5 381 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 CARD8Q9Y2G2 431 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 RAP2CQ9Y3L5 183 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 LYVE1Q9Y5Y7 322 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 ALKQ9UM73 1620 aa4.28□□□□□ -1.72
PTCH1-216ENST00000548379 ZNF804BA4D1E1 1349 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 AFF2P51816 1311 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 KAT6BQ8WYB5 2073 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 LRRC53A6NM62 1247 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 KLRF2D3W0D1 207 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 USP17L23D6RBM5 183 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 GTPBP1O00178 669 aaKnown RBP4.27□□□□□ -1.73
PTCH1-216ENST00000548379 BCAT2O15382 392 aaPredicted RBP4.27□□□□□ -1.73
PTCH1-216ENST00000548379 SLC25A17O43808 307 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 TIPRLO75663 272 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 EPN2O95208 641 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 MT-CYBP00156 380 aaPredicted RBP4.27□□□□□ -1.73
PTCH1-216ENST00000548379 CHRNB1P11230 501 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 ENO3P13929 434 aaPredicted RBP4.27□□□□□ -1.73
PTCH1-216ENST00000548379 ITGAXP20702 1163 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 CD38P28907 300 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 PIP4K2AP48426 406 aaPredicted RBP4.27□□□□□ -1.73
PTCH1-216ENST00000548379 RASSF2P50749 326 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 SRSF4Q08170 494 aaKnown RBP4.27□□□□□ -1.73
PTCH1-216ENST00000548379 FAM27E3Q08E93 113 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 SHBQ15464 509 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 DUSP6Q16828 381 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 COLEC12Q5KU26 742 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 ZNF626Q68DY1 528 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 HMBOX1Q6NT76 420 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 SYCE2Q6PIF2 218 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 KLHL24Q6TFL4 600 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 TRILQ7L0X0 811 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 DENND6AQ8IWF6 608 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 FAM217AQ8IXS0 508 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 KIAA2013Q8IYS2 634 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 HORMAD2Q8N7B1 307 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 ARHGEF2Q92974 986 aaKnown RBP4.27□□□□□ -1.73
PTCH1-216ENST00000548379 RNF183Q96D59 192 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 YME1L1Q96TA2 773 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 TRMOQ9BU70 441 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 SLITRK6Q9H5Y7 841 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 TASP1Q9H6P5 420 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 ASAH2Q9NR71 780 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 SEPT11Q9NVA2 429 aaKnown RBP4.27□□□□□ -1.73
PTCH1-216ENST00000548379 EHD2Q9NZN4 543 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 PTGFRNQ9P2B2 879 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 C11orf21Q9P2W6 132 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 TBC1D29Q9UFV1 150 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 NDRG3Q9UGV2 375 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 MKLN1Q9UL63 735 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 ABCC5O15440 1437 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 VPS8Q8N3P4 1428 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 PIK3R4Q99570 1358 aa4.27□□□□□ -1.73
PTCH1-216ENST00000548379 ZC3H13Q5T200 1668 aaKnown RBP4.26□□□□□ -1.73
PTCH1-216ENST00000548379 TTC36A6NLP5 189 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 OR2C1O95371 312 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 PCNAP12004 261 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 ALOX12P18054 663 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 AGAP20933 346 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 UBA7P41226 1012 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 GNAQP50148 359 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 CSTF3Q12996 717 aaKnown RBP4.26□□□□□ -1.73
PTCH1-216ENST00000548379 GRIK3Q13003 919 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 OLIG2Q13516 323 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 ACVR2BQ13705 512 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 FGFBP1Q14512 234 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 LPIN1Q14693 890 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 VEPH1Q14D04 833 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 DPCR1Q3MIW9 517 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 EPHA10Q5JZY3 1008 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 Q5PR19 223 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 HEPHL1Q6MZM0 1159 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 TTI2Q6NXR4 508 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 CPLX2Q6PUV4 134 aaKnown RBP4.26□□□□□ -1.73
PTCH1-216ENST00000548379 IKBIPQ70UQ0 350 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 ARHGAP12Q8IWW6 846 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 RPAP2Q8IXW5 612 aaPredicted RBP4.26□□□□□ -1.73
PTCH1-216ENST00000548379 FRMD1Q8N878 549 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 ENGASEQ8NFI3 743 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 CEP76Q8TAP6 659 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 TMEM174Q8WUU8 243 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 PABPC5Q96DU9 382 aaKnown RBP4.26□□□□□ -1.73
PTCH1-216ENST00000548379 TIGD1Q96MW7 591 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 MXRA8Q9BRK3 442 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 SDF4Q9BRK5 362 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 MSTO1Q9BUK6 570 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 CDT1Q9H211 546 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 POLR1BQ9H9Y6 1135 aa4.26□□□□□ -1.73
PTCH1-216ENST00000548379 FBRSL1Q9HCM7 1045 aaKnown RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms