RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 FGF22Q9HCT0 170 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 MRPL40Q9NQ50 206 aaKnown RBP12.84□□□□□ -0.35
SCAF11-208ENST00000546534 TMEM51Q9NW97 253 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 HPCAL4Q9UM19 191 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 PCDHGA3Q9Y5H0 932 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 SDK2Q58EX2 2172 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 LRP4O75096 1905 aa12.84□□□□□ -0.35
SCAF11-208ENST00000546534 DOCK4Q8N1I0 1966 aa12.83□□□□□ -0.35
SCAF11-208ENST00000546534 IGHV5-10-1A0A0J9YXX1 117 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 FAM170AA1A519 330 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 TMEM202A6NGA9 273 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 HGSO14964 777 aaPredicted RBP12.83□□□□□ -0.36
SCAF11-208ENST00000546534 TMCC1O94876 653 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 GNA14O95837 355 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 XPAP23025 273 aaPredicted RBP12.83□□□□□ -0.36
SCAF11-208ENST00000546534 PPP1R2P41236 205 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 GABRB2P47870 512 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 MAPKAPK2P49137 400 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 STX17P56962 302 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 OR1D5P58170 312 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 ELP6Q0PNE2 266 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 MTM1Q13496 603 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 MANEALQ5VSG8 457 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 SPECC1LQ69YQ0 1117 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 RWDD4Q6NW29 188 aaKnown RBP12.83□□□□□ -0.36
SCAF11-208ENST00000546534 SLC47A2Q86VL8 602 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 NLRP14Q86W24 1093 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 CACNA2D3Q8IZS8 1091 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 PLA2G15Q8NCC3 412 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 OR56A4Q8NGH8 313 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 CCL4L1Q8NHW4 92 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 GPBAR1Q8TDU6 330 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 FAM81BQ96LP2 452 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 CATSPER2Q96P56 530 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 CDH19Q9H159 772 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 LRRC4CQ9HCJ2 640 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 APEX2Q9UBZ4 518 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 TSR3Q9UJK0 312 aaKnown RBP12.83□□□□□ -0.36
SCAF11-208ENST00000546534 MAN1B1Q9UKM7 699 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 MFHAS1Q9Y4C4 1052 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 B3GALT1Q9Y5Z6 326 aa12.83□□□□□ -0.36
SCAF11-208ENST00000546534 BICDL2A1A5D9 508 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 ZNF891A8MT65 544 aaPredicted RBP12.82□□□□□ -0.36
SCAF11-208ENST00000546534 FAM72CH0Y354 149 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 INSIG1O15503 277 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 NKX2-8O15522 239 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 BUB1O43683 1085 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 KDELR3O43731 214 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 RAMP2O60895 175 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 PIGNO95427 931 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 IGSF6O95976 241 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 PNMA6AP0CW24 399 aaPredicted RBP12.82□□□□□ -0.36
SCAF11-208ENST00000546534 RHOQP17081 205 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 BMP6P22004 513 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 ALDH4A1P30038 563 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 SCNN1AP37088 669 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 SUOXP51687 545 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 MAZP56270 477 aaKnown RBP12.82□□□□□ -0.36
SCAF11-208ENST00000546534 RHOAP61586 193 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 AGERQ15109 404 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 RAB6CQ53S08 254 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 C2CD6Q53TS8 623 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 FAM72AQ5TYM5 149 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 FAM72DQ6L9T8 149 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 FAM72BQ86X60 149 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 XYLT1Q86Y38 959 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 ART4Q93070 314 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 C18orf8Q96DM3 657 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 HMCESQ96FZ2 354 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 CCDC74BQ96LY2 380 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 MAGEB5Q9BZ81 275 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 RAB6CQ9H0N0 254 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 PCDH12Q9NPG4 1184 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 TMEM248Q9NWD8 314 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 OR12D3Q9UGF7 316 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 TMEM59LQ9UK28 342 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 AJAP1Q9UKB5 411 aaPredicted RBP12.82□□□□□ -0.36
SCAF11-208ENST00000546534 CTNND2Q9UQB3 1225 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 DAAM1Q9Y4D1 1078 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 UNC79Q9P2D8 2635 aa12.82□□□□□ -0.36
SCAF11-208ENST00000546534 LRRK1Q38SD2 2015 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 GOLGA8SH3BPF8 625 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 FOXN3O00409 490 aaPredicted RBP12.81□□□□□ -0.36
SCAF11-208ENST00000546534 DUX1O43812 170 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 CD1CP29017 333 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 ADRA1BP35368 520 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 GCGRP47871 477 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 LIG3P49916 1009 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 KIAA1024LP59773 190 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 ATP11AP98196 1134 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 NRG1Q02297 640 aaPredicted RBP12.81□□□□□ -0.36
SCAF11-208ENST00000546534 UGP2Q16851 508 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 TMEM35BQ8NCS4 154 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 KIAA1524Q8TCG1 905 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 FUBP1Q96AE4 644 aaKnown RBP12.81□□□□□ -0.36
SCAF11-208ENST00000546534 MIB2Q96AX9 1013 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 ABHD17AQ96GS6 310 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 SLC45A3Q96JT2 553 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 KLC2Q9H0B6 622 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 CYP4F12Q9HCS2 524 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms