RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RPIAP49247 311 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 PEX5P50542 639 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 PAPOLAP51003 745 aaKnown RBP8.53□□□□□ -1.04
USP28-215ENST00000545608 SUOXP51687 545 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 HK3P52790 923 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 AIF1P55008 147 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 TPI1P60174 286 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 ELP6Q0PNE2 266 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 C19orf57Q0VDD7 668 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 MAMLD1Q13495 774 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 INPP5AQ14642 412 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 LRRC14Q15048 493 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 TCEA2Q15560 299 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 KCTD16Q68DU8 428 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 SASS6Q6UVJ0 657 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 ENPP7Q6UWV6 458 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 RBM44Q6ZP01 1051 aaKnown RBP8.53□□□□□ -1.04
USP28-215ENST00000545608 RD3Q7Z3Z2 195 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 CAMK1DQ8IU85 385 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 HID1Q8IV36 788 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 ANKRD20A12PQ8NF67 263 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 TPCN2Q8NHX9 752 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 KCNE4Q8WWG9 221 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 NSMCE3Q96MG7 304 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 SLC46A1Q96NT5 459 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 NCAPGQ9BPX3 1015 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 CCDC3Q9BQI4 270 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 APOOQ9BUR5 198 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 EDEM3Q9BZQ6 932 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 CPNE5Q9HCH3 593 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 GULP1Q9UBP9 304 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 TEX51A0A1B0GUA7 166 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 TMEM110-MUSTN1A8MSY1 372 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 EEF2KO00418 725 aaKnown RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 NTN3O00634 580 aaPredicted RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 KLK10O43240 276 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 ZIC2O95409 532 aaPredicted RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 PCCBP05166 539 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 CTSEP14091 401 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 ERCC2P18074 760 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 PSMA2P25787 234 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 RBMS1P29558 406 aaKnown RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 CSNK1DP48730 415 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 LIG3P49916 1009 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 BLKP51451 505 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 NDST2P52849 883 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 PDX1P52945 283 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 SRP54P61011 504 aaKnown RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 SKOR1P84550 965 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 KCNC4Q03721 635 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 NFATC4Q14934 902 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 STX1AQ16623 288 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 ARHGAP40Q5TG30 622 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 AFMIDQ63HM1 303 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 PLEKHA7Q6IQ23 1121 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 ESRP1Q6NXG1 681 aaKnown RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 FOXR1Q6PIV2 292 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 IGF2-ASQ6U949 168 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 ARHGAP36Q6ZRI8 547 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 SRLQ86TD4 932 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 ARHGAP12Q8IWW6 846 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 TP53INP2Q8IXH6 220 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 FSTL5Q8N475 847 aaPredicted RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 PLA2G15Q8NCC3 412 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 TSEN2Q8NCE0 465 aaKnown RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 LSM14AQ8ND56 463 aaKnown RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 NAT6Q93015 286 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 GRAMD1AQ96CP6 724 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 ZNF641Q96N77 438 aaPredicted RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 PEBP4Q96S96 227 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 KCTD15Q96SI1 283 aaPredicted RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 SNRNP25Q9BV90 132 aaKnown RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 TRIM7Q9C029 511 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 DHX35Q9H5Z1 703 aaKnown RBP8.52□□□□□ -1.05
USP28-215ENST00000545608 THSD1Q9NS62 852 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 SIRPGQ9P1W8 387 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 PCSK1NQ9UHG2 260 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 AP4E1Q9UPM8 1137 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 ATP8A1Q9Y2Q0 1164 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 OR1A2Q9Y585 309 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 PCDHGA8Q9Y5G5 932 aa8.52□□□□□ -1.05
USP28-215ENST00000545608 TMEM191CA6NGB0 347 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 ARHGAP42A6NI28 874 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 CDRT15L2A8MXV6 281 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 DAPK3O43293 454 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 TCEA3O75764 348 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 PALMO75781 387 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 RECQL5O94762 991 aaPredicted RBP8.51□□□□□ -1.05
USP28-215ENST00000545608 RASGRP1O95267 797 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 ALPIP09923 528 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 CCDC172P0C7W6 258 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 GM2AP17900 193 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 VARSP26640 1264 aaKnown RBP8.51□□□□□ -1.05
USP28-215ENST00000545608 HTR1BP28222 390 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 MIPP30301 263 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 HTR7P34969 479 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 MMP12P39900 470 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 TMPRSS3P57727 454 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 CCL7P80098 99 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 RALGDSQ12967 914 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms