RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	NPIPB11	E5RHQ5	1161 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	TAF4	O00268	1085 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	SLC16A5	O15375	505 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	TF	P02787	698 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	MMP2	P08253	660 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	XBP1	P17861	261 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	CD58	P19256	250 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	SHMT1	P34896	483 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	ERVFC1-1	P60608	527 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	PWP2	Q15269	919 aa	Known RBP	6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	RNPS1	Q15287	305 aa	Known RBP	6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	ESX1	Q8N693	406 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	SCCPDH	Q8NBX0	429 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	AGBL3	Q8NEM8	1001 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	MTBP	Q96DY7	904 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	IGSF21	Q96ID5	467 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	ADGRG7	Q96K78	797 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	PLEKHA4	Q9H4M7	779 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	ZNF556	Q9HAH1	456 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	VEZT	Q9HBM0	779 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	PLSCR4	Q9NRQ2	329 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	PDP2	Q9P2J9	529 aa		6.11	□□□□□ -1.43
YBX3-210	ENST00000540975	DOCK7	Q96N67	2140 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	NOTCH4	Q99466	2003 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	MAGEA13P	A6NCF6	341 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	IFNL4	K9M1U5	179 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	SNRNP70	P08621	437 aa	Known RBP	6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	IRF1	P10914	325 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	STX2	P32856	288 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	PAFAH1B1	P43034	410 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	PTP4A2	Q12974	167 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	CALCRL	Q16602	461 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	TCTN1	Q2MV58	587 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	AMZ1	Q400G9	498 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	ANKRD54	Q6NXT1	300 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	MTSS1L	Q765P7	747 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	TDRP	Q86YL5	185 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	BEST2	Q8NFU1	509 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	ST8SIA4	Q92187	359 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	H2AFJ	Q9BTM1	129 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	MKKS	Q9NPJ1	570 aa	Predicted RBP	6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	KCND2	Q9NZV8	630 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	MALT1	Q9UDY8	824 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975	A4GNT	Q9UNA3	340 aa		6.1	□□□□□ -1.43
YBX3-210	ENST00000540975		A0A1W2PQM1	296 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	BCAT2	O15382	392 aa	Predicted RBP	6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	NDUFS7	O75251	213 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	CLDN14	O95500	239 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	AFP	P02771	609 aa	Known RBP	6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	ECT2L	Q008S8	904 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	PPP6R3	Q5H9R7	873 aa	Predicted RBP	6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	FAM69A	Q5T7M9	428 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	FBXO46	Q6PJ61	603 aa	Predicted RBP	6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	KIF1BP	Q96EK5	621 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	BICD1	Q96G01	975 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	OR1F2P	Q96R84	312 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	CSF3R	Q99062	836 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	BPIFA1	Q9NP55	256 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	NOX4	Q9NPH5	578 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	MPP6	Q9NZW5	540 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	RCOR1	Q9UKL0	485 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	CRYL1	Q9Y2S2	319 aa		6.09	□□□□□ -1.43
YBX3-210	ENST00000540975	SEC14L5	O43304	696 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	ABCD3	P28288	659 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	POU3F1	Q03052	451 aa	Predicted RBP	6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	SNTA1	Q13424	505 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	C2orf68	Q2NKX9	166 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	MMEL1	Q495T6	779 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	LINGO2	Q7L985	606 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	SLC35F3	Q8IY50	421 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	EXOC8	Q8IYI6	725 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	ZNF385A	Q96PM9	386 aa	Known RBP	6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	PAIP1	Q9H074	479 aa	Known RBP	6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	RETREG1	Q9H6L5	497 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	ESRP2	Q9H6T0	727 aa	Known RBP	6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	SMARCAL1	Q9NZC9	954 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	FBXO9	Q9UK97	447 aa	Predicted RBP	6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	STON1	Q9Y6Q2	735 aa		6.08	□□□□□ -1.44
YBX3-210	ENST00000540975	TCF20	Q9UGU0	1960 aa	Known RBP	6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	KDM4B	O94953	1096 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	PMS2P2	O95744	297 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	SRC	P12931	536 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	GABRB2	P47870	512 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	GNAQ	P50148	359 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	ZNF155	Q12901	538 aa	Predicted RBP	6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	OASL	Q15646	514 aa	Known RBP	6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	NR2C2AP	Q86WQ0	139 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	HEATR4	Q86WZ0	1026 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	ZBTB2	Q8N680	514 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	PPM1E	Q8WY54	764 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	C3orf30	Q96M34	536 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	TBATA	Q96M53	351 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	SLITRK1	Q96PX8	696 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	KXD1	Q9BQD3	176 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	KCNN2	Q9H2S1	579 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	SARDH	Q9UL12	918 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	SCIN	Q9Y6U3	715 aa		6.07	□□□□□ -1.44
YBX3-210	ENST00000540975	SAA2-SAA4	A0A096LPE2	208 aa		6.06	□□□□□ -1.44
YBX3-210	ENST00000540975	TMEM202	A6NGA9	273 aa		6.06	□□□□□ -1.44
YBX3-210	ENST00000540975	SOCS6	O14544	535 aa		6.06	□□□□□ -1.44

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