RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 BUD31P41223 144 aaPredicted RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 SRP54P61011 504 aaKnown RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 CPSF6Q16630 551 aaKnown RBP eCLIP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 ATP13A4Q4VNC1 1196 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 GPR158Q5T848 1215 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 PANX1Q96RD7 426 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 ZNF607Q96SK3 696 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 GAS2L1Q99501 681 aaPredicted RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 TLE6Q9H808 572 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 MEIS2O14770 477 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 CASP7P55210 303 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 TTC23Q5W5X9 447 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 TRIM40Q6P9F5 258 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 GPR135Q8IZ08 494 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 DEPDC4Q8N2C3 294 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 BPIFB6Q8NFQ5 453 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 PRDM8Q9NQV8 689 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 ABCA9Q8IUA7 1624 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 ITSN1Q15811 1721 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 BCL9O00512 1426 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 FAM237BA0A1B0GVD1 139 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 SNUPNO95149 360 aaKnown RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 FKBP1BP68106 108 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 PHYKPLQ8IUZ5 450 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 C12orf50Q8NA57 414 aaPredicted RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 RDH11Q8TC12 318 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 LGMNQ99538 433 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 SPAG4Q9NPE6 437 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 GULP1Q9UBP9 304 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 OR10H3O60404 316 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 ZNF37AP17032 561 aaPredicted RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 MYDGFQ969H8 173 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 HMG20AQ9NP66 347 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 MRTO4Q9UKD2 239 aaKnown RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 ZC3H13Q5T200 1668 aaKnown RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 YDJCA8MPS7 323 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 COX4I1P13073 169 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 PSME3P61289 254 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 SPIBQ01892 262 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 BNC1Q01954 994 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 POLNQ7Z5Q5 900 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 OR52K2Q8NGK3 314 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 TIFAQ96CG3 184 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 PTCD3Q96EY7 689 aaKnown RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 ITCHQ96J02 903 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 FCRL2Q96LA5 508 aaPredicted RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 NOL6Q9H6R4 1146 aaKnown RBP18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 SLC28A3Q9HAS3 691 aa18.23■□□□□ 0.51
SFSWAP-203ENST00000535236 SMARCB1Q12824 385 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 MZT2BQ6NZ67 158 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 CHSY3Q70JA7 882 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 PIWIL4Q7Z3Z4 852 aaKnown RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 CREG2Q8IUH2 290 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 OR5B17Q8NGF7 314 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 OR4A15Q8NGL6 344 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 HDAC10Q969S8 669 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 SLC28A2O43868 658 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 LGALS3BPQ08380 585 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 PPIDQ08752 370 aaKnown RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 GET4Q7L5D6 327 aaPredicted RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 LNX1Q8TBB1 728 aaPredicted RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 ACMSDQ8TDX5 336 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 FUCA2Q9BTY2 467 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 TBC1D30Q9Y2I9 924 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 CXCR3P49682 368 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 PPP1R26Q5T8A7 1209 aaPredicted RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 SPESP1Q6UW49 350 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 C12orf29Q8N999 325 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 TEX47Q8TBZ9 253 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 HAS1Q92839 578 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 PPCDCQ96CD2 204 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 C3orf14Q9HBI5 128 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 RBM7Q9Y580 266 aaKnown RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 PSMG1O95456 288 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 GJB1P08034 283 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 AIF1P55008 147 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 CTBP1Q13363 440 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 TUSC3Q13454 348 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 ZDHHC20Q5W0Z9 365 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 SPPL2BQ8TCT7 592 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 EBNA1BP2Q99848 306 aaKnown RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 MRPL45Q9BRJ2 306 aaKnown RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 C1orf50Q9BV19 199 aa18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 PHPT1Q9NRX4 125 aaPredicted RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 DDX18Q9NVP1 670 aaKnown RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 ATXN2Q99700 1313 aaKnown RBP18.22■□□□□ 0.51
SFSWAP-203ENST00000535236 CNTNAP1P78357 1384 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 ITPKBP27987 946 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 DEF8Q6ZN54 512 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 ARHGAP36Q6ZRI8 547 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 MOB2Q70IA6 237 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 BAP1Q92560 729 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 CNPPD1Q9BV87 410 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 DIP2CQ9Y2E4 1556 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 BIRC5O15392 142 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 MFN2O95140 757 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 LRATO95237 230 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 ITGA2BP08514 1039 aa18.21■□□□□ 0.51
SFSWAP-203ENST00000535236 NR1D2Q14995 579 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms