RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ADAMTS9Q9P2N4 1935 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 A6NNZ2 444 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 KRT86O43790 486 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 SH3BP5O60239 455 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 MAGEC1O60732 1142 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 FTCDO95954 541 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 THEGLP0DJG4 465 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 CEACAM1P13688 526 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 XPAP23025 273 aaPredicted RBP13.04□□□□□ -0.32
VPS28-216ENST00000533806 IGFALSP35858 605 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 SKOR1P84550 965 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 SEMG2Q02383 582 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 AP1B1Q10567 949 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 XRCC4Q13426 336 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 NOMO1Q15155 1222 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 PTPRRQ15256 657 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 WSCD2Q2TBF2 565 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 TEX44Q53QW1 395 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 PPM1JQ5JR12 505 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 TPRG1LQ5T0D9 272 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 CFAP58Q5T655 872 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 ARMC12Q5T9G4 340 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 KDM7AQ6ZMT4 941 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 Q6ZSR6 202 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 DCP2Q8IU60 420 aaKnown RBP13.04□□□□□ -0.32
VPS28-216ENST00000533806 CCDC50Q8IVM0 306 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 BAHD1Q8TBE0 780 aaPredicted RBP13.04□□□□□ -0.32
VPS28-216ENST00000533806 SAP25Q8TEE9 199 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 IMP4Q96G21 291 aaKnown RBP13.04□□□□□ -0.32
VPS28-216ENST00000533806 TEKT5Q96M29 485 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 COQ10AQ96MF6 247 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 MYOCQ99972 504 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 TDRD1Q9BXT4 1180 aaKnown RBP13.04□□□□□ -0.32
VPS28-216ENST00000533806 B4GALT6Q9UBX8 382 aa13.04□□□□□ -0.32
VPS28-216ENST00000533806 PACSIN2Q9UNF0 486 aaPredicted RBP13.04□□□□□ -0.32
VPS28-216ENST00000533806 DOCK9Q9BZ29 2069 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 SPTY2D1-AS1A0A0U1RR47 76 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 HACD1B0YJ81 288 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 FPGTO14772 594 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 GIPC1O14908 333 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 CPP00450 1065 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 CCDC175P0C221 793 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 LHCGRP22888 699 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 PTPN3P26045 913 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 CD68P34810 354 aaPredicted RBP13.03□□□□□ -0.32
VPS28-216ENST00000533806 RABIFP47224 123 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 FAM193AP78312 1265 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 ITKQ08881 620 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 KLF1Q13351 362 aaPredicted RBP13.03□□□□□ -0.32
VPS28-216ENST00000533806 FZD2Q14332 565 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 NAXDQ8IW45 347 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 DEFB124Q8NES8 71 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 PDCD6IPQ8WUM4 868 aaKnown RBP13.03□□□□□ -0.32
VPS28-216ENST00000533806 TFB1MQ8WVM0 346 aaKnown RBP13.03□□□□□ -0.32
VPS28-216ENST00000533806 IFT43Q96FT9 208 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 CAMK1GQ96NX5 476 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 QKIQ96PU8 341 aaKnown RBP eCLIP13.03□□□□□ -0.32
VPS28-216ENST00000533806 TRIB3Q96RU7 358 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 CEP41Q9BYV8 373 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 SLC25A51Q9H1U9 297 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 HAUS2Q9NVX0 235 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 PCOLCE2Q9UKZ9 415 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 GUCA1BQ9UMX6 200 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 COQ6Q9Y2Z9 468 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 CABIN1Q9Y6J0 2220 aa13.03□□□□□ -0.32
VPS28-216ENST00000533806 TRPM6Q9BX84 2022 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 A0A0J9YYE9 177 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 NPIPB15A6NHN6 443 aaPredicted RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 TOR1BO14657 336 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 MTSS1O43312 755 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 RECQL5O94762 991 aaPredicted RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 HEXIM1O94992 359 aaKnown RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 TRBC1P01850 177 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 EPHA8P29322 1005 aaPredicted RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 VIPR1P32241 457 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 HNF1BP35680 557 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 CD86P42081 329 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 CCT8P50990 548 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 RPL26P61254 145 aaKnown RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 YPEL5P62699 121 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 BNIP3Q12983 259 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 ZNF211Q13398 564 aaPredicted RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 LRRC14Q15048 493 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 IRF4Q15306 451 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 SLC14A2Q15849 920 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 CNGA3Q16281 694 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 CDKN3Q16667 212 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 PSAPL1Q6NUJ1 521 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 ZC3H18Q86VM9 953 aaKnown RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 OXR1Q8N573 874 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 UBL4BQ8N7F7 174 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 ACTL9Q8TC94 416 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 HTR3CQ8WXA8 447 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 HAUS1Q96CS2 278 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 PDLIM2Q96JY6 352 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 AGAP3Q96P47 875 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 SMIM14Q96QK8 99 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 LYSMD1Q96S90 227 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 C1QTNF7Q9BXJ2 289 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 CAAP1Q9H8G2 361 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms