RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PRKCGP05129 697 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 THEGLP0DJG4 465 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 PYGMP11217 842 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 C6P13671 934 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 CD59P13987 128 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 CSRP1P21291 193 aaKnown RBP15.12■□□□□ 0.01
CPSF1-208ENST00000532560 CA4P22748 312 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 LIG3P49916 1009 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 CLDN2P57739 230 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 FAM193AP78312 1265 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 NIPAL4Q0D2K0 466 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 AGERQ15109 404 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 NOMO1Q15155 1222 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 SLC14A2Q15849 920 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 PIP4P1Q86T03 277 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 OXR1Q8N573 874 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 CNTD1Q8N815 330 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 PDCD6IPQ8WUM4 868 aaKnown RBP15.12■□□□□ 0.01
CPSF1-208ENST00000532560 CENPTQ96BT3 561 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 HAUS1Q96CS2 278 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 KLHDC7BQ96G42 594 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 HES6Q96HZ4 224 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 QKIQ96PU8 341 aaKnown RBP eCLIP15.12■□□□□ 0.01
CPSF1-208ENST00000532560 MCCC1Q96RQ3 725 aaPredicted RBP15.12■□□□□ 0.01
CPSF1-208ENST00000532560 ELF4Q99607 663 aaPredicted RBP15.12■□□□□ 0.01
CPSF1-208ENST00000532560 HERPUD2Q9BSE4 406 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 TDRD1Q9BXT4 1180 aaKnown RBP15.12■□□□□ 0.01
CPSF1-208ENST00000532560 TM7SF3Q9NS93 570 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 KCND1Q9NSA2 647 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 SEPT10Q9P0V9 454 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 PACSIN2Q9UNF0 486 aaPredicted RBP15.12■□□□□ 0.01
CPSF1-208ENST00000532560 PCDHB9Q9Y5E1 797 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 KNL1Q8NG31 2342 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 LRRK1Q38SD2 2015 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 A0A1B0GTQ1 180 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 FPGTO14772 594 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 PCDHGA12O60330 932 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 MMP2P08253 660 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 ELFN1P0C7U0 828 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 PTPN3P26045 913 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 RABIFP47224 123 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 XRCC4Q13426 336 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 IHHQ14623 411 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 TEX44Q53QW1 395 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 LIPIQ6XZB0 460 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 ERMP1Q7Z2K6 904 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 PTAR1Q7Z6K3 402 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-208ENST00000532560 ZC3H18Q86VM9 953 aaKnown RBP15.11■□□□□ 0.01
CPSF1-208ENST00000532560 SPATS2Q86XZ4 545 aaKnown RBP15.11■□□□□ 0.01
CPSF1-208ENST00000532560 TP53I13Q8NBR0 393 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-208ENST00000532560 OR13H1Q8NG92 308 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 BMFQ96LC9 184 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 CEP41Q9BYV8 373 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 B4GALT6Q9UBX8 382 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 PPIL1Q9Y3C6 166 aa15.11■□□□□ 0.01
CPSF1-208ENST00000532560 POM121BA6NF01 834 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 TOR1BO14657 336 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 TJP3O95049 919 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 PDHA1P08559 390 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 CYP2A6P11509 494 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-208ENST00000532560 VIPR1P32241 457 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 IGFALSP35858 605 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 CD86P42081 329 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 RXRGP48443 463 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 ARRB1P49407 418 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-208ENST00000532560 RPL26P61254 145 aaKnown RBP15.1■□□□□ 0.01
CPSF1-208ENST00000532560 SKOR1P84550 965 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 OTUD4Q01804 1114 aaKnown RBP15.1■□□□□ 0.01
CPSF1-208ENST00000532560 WASHC5Q12768 1159 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 CCDC181Q5TID7 509 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 DBX2Q6ZNG2 339 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 Q6ZSR6 202 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 USP45Q70EL2 814 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 B4GALNT4Q76KP1 1039 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 DCP2Q8IU60 420 aaKnown RBP15.1■□□□□ 0.01
CPSF1-208ENST00000532560 NAXDQ8IW45 347 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 NDUFAF2Q8N183 169 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 SLC22A18ASQ8N1D0 253 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.1■□□□□ 0.01
CPSF1-208ENST00000532560 ACTL9Q8TC94 416 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 PIH1D2Q8WWB5 315 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 IMP4Q96G21 291 aaKnown RBP15.1■□□□□ 0.01
CPSF1-208ENST00000532560 TEKT5Q96M29 485 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 AGAP3Q96P47 875 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 ALS2CR12Q96Q35 445 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 VAT1Q99536 393 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 SLC25A51Q9H1U9 297 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 SLC32A1Q9H598 525 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 RPL26L1Q9UNX3 145 aaKnown RBP15.1■□□□□ 0.01
CPSF1-208ENST00000532560 PPP2R2CQ9Y2T4 447 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 COQ6Q9Y2Z9 468 aa15.1■□□□□ 0.01
CPSF1-208ENST00000532560 A0A0J9YYE9 177 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 NPIPB15A6NHN6 443 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-208ENST00000532560 KIF2AO00139 706 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-208ENST00000532560 KCNK3O14649 394 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 FLRT2O43155 660 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 LZTS3O60299 673 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-208ENST00000532560 HEXIM1O94992 359 aaKnown RBP15.09■□□□□ 0.01
CPSF1-208ENST00000532560 KCNK5O95279 499 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 PRLP01236 227 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms