RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SERPINC1P01008 464 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 MYBL1P10243 752 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 NFKBIAP25963 317 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 ARL4AP40617 200 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 AP1S1P61966 158 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 NSUN2Q08J23 767 aaKnown RBP eCLIP14.82□□□□□ -0.04
VPS28-215ENST00000531924 ZNF235Q14590 738 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 ACOX1Q15067 660 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 BBS5Q8N3I7 341 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 KYQ8NBH2 561 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 OR6C4Q8NGE1 309 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 FNIP1Q8TF40 1166 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 NSMCE1Q8WV22 266 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 PEBP4Q96S96 227 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 BPIFA3Q9BQP9 254 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 SYT11Q9BT88 431 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 DPH1Q9BZG8 443 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 STRADBQ9C0K7 418 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 MOSPD1Q9UJG1 213 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 PNMA8BQ9ULN7 279 aaPredicted RBP14.82□□□□□ -0.04
VPS28-215ENST00000531924 ENTPD2Q9Y5L3 495 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 CCDC187A0A096LP49 1063 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 A0A1W2PQC6 194 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 A8MX80 341 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 PDE2AO00408 941 aaPredicted RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 RECQL5O94762 991 aaPredicted RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 TNFSF15O95150 251 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 CELA2BP08218 269 aaPredicted RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 RGRP47804 291 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 HCAR3P49019 387 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 TPM4P67936 248 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 LBRQ14739 615 aaKnown RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 AGERQ15109 404 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 BOLA3Q53S33 107 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 TAF1BQ53T94 588 aaPredicted RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 TMCO4Q5TGY1 634 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 AFMIDQ63HM1 303 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 TMCO3Q6UWJ1 677 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 ZNF571Q7Z3V5 609 aaPredicted RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 TAF8Q7Z7C8 310 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 ZSWIM9Q86XI8 627 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 LSM14AQ8ND56 463 aaKnown RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 PDCD6IPQ8WUM4 868 aaKnown RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 CCDC74AQ96AQ1 378 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 ZNF599Q96NL3 588 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 SLC46A1Q96NT5 459 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 GFM1Q96RP9 751 aaKnown RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.81□□□□□ -0.04
VPS28-215ENST00000531924 EPB41L5Q9HCM4 733 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 ASCL3Q9NQ33 180 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 AIPL1Q9NZN9 384 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 CWC15Q9P013 229 aaKnown RBP14.81□□□□□ -0.04
VPS28-215ENST00000531924 PCDHGA8Q9Y5G5 932 aa14.81□□□□□ -0.04
VPS28-215ENST00000531924 ASXL3Q9C0F0 2248 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 A0A1W2PQ67 120 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 LRCH4O75427 683 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 SKILP12757 684 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 HSPA9P38646 679 aaKnown RBP14.8□□□□□ -0.04
VPS28-215ENST00000531924 PRKCIP41743 596 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 ZNF165P49910 485 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 TDRD12Q587J7 1177 aaKnown RBP14.8□□□□□ -0.04
VPS28-215ENST00000531924 ARHGAP40Q5TG30 622 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 IGF2-ASQ6U949 168 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 ARHGAP36Q6ZRI8 547 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 DPPA4Q7L190 304 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 ARHGAP12Q8IWW6 846 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 ARFGAP1Q8N6T3 406 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 NPWQ8N729 165 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 FAM46DQ8NEK8 389 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 OR56A4Q8NGH8 313 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 HSPH1Q92598 858 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 PSKH2Q96QS6 385 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 TRIM7Q9C029 511 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 WDR26Q9H7D7 661 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 CPNE5Q9HCH3 593 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 DGKBQ9Y6T7 804 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 CHD5Q8TDI0 1954 aa14.8□□□□□ -0.04
VPS28-215ENST00000531924 DDX3XO00571 662 aaKnown RBP eCLIP14.79□□□□□ -0.046e-7■■□□□ 12.4
VPS28-215ENST00000531924 PRB1P04280 392 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 RPLP0P05388 317 aaKnown RBP14.79□□□□□ -0.04
VPS28-215ENST00000531924 PCK1P35558 622 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 MLLT3P42568 568 aaPredicted RBP14.79□□□□□ -0.04
VPS28-215ENST00000531924 SSR1P43307 286 aaKnown RBP14.79□□□□□ -0.04
VPS28-215ENST00000531924 KIAA1024LP59773 190 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 DPYSQ14117 519 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 TSR1Q2NL82 804 aaKnown RBP14.79□□□□□ -0.04
VPS28-215ENST00000531924 SMTNL2Q2TAL5 461 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 DENND2CQ68D51 928 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 LIPIQ6XZB0 460 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 JAMLQ86YT9 394 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 FBXO39Q8N4B4 442 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 ATPAF2Q8N5M1 289 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 Q8N9G6 341 aaPredicted RBP14.79□□□□□ -0.04
VPS28-215ENST00000531924 PLA2G15Q8NCC3 412 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 OR1E3Q8WZA6 343 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 FUBP1Q96AE4 644 aaKnown RBP14.79□□□□□ -0.04
VPS28-215ENST00000531924 ECHDC3Q96DC8 303 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 PDXPQ96GD0 296 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms