RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ARFGAP1Q8N6T3 406 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 Q8N9G6 341 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-201ENST00000526271 CCDC97Q96F63 343 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-201ENST00000526271 GFM1Q96RP9 751 aaKnown RBP14.37□□□□□ -0.11
CPSF1-201ENST00000526271 FUCA2Q9BTY2 467 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 TMEM168Q9H0V1 697 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 SEMA6CQ9H3T2 930 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 SUV39H2Q9H5I1 410 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 TMEM51Q9NW97 253 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 GPATCH2LQ9NWQ4 482 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 TMEM63CQ9P1W3 806 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 FZD10Q9ULW2 581 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 SIK3Q9Y2K2 1263 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 DGKBQ9Y6T7 804 aa14.37□□□□□ -0.11
CPSF1-201ENST00000526271 USP9XQ93008 2570 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-201ENST00000526271 UTP20O75691 2785 aaKnown RBP14.37□□□□□ -0.11
CPSF1-201ENST00000526271 TOR1BO14657 336 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 ARHGAP6O43182 974 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 RASGRP1O95267 797 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 PCCBP05166 539 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 EPHB2P29323 1055 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 KCNC4Q03721 635 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 SRSF1Q07955 248 aaKnown RBP eCLIP14.36□□□□□ -0.11
CPSF1-201ENST00000526271 CLCA4Q14CN2 919 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 TCP11X2Q5H9J9 407 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 CCDC183Q5T5S1 534 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 ARHGAP36Q6ZRI8 547 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 CYP4V2Q6ZWL3 525 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-201ENST00000526271 C17orf82Q86X59 251 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-201ENST00000526271 PHF13Q86YI8 300 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-201ENST00000526271 CCNJLQ8IV13 435 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 ARHGAP12Q8IWW6 846 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 ECHDC3Q96DC8 303 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 SGF29Q96ES7 293 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 CELF6Q96J87 481 aaKnown RBP14.36□□□□□ -0.11
CPSF1-201ENST00000526271 WDR92Q96MX6 357 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 SLC39A8Q9C0K1 460 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 NLRC4Q9NPP4 1024 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 KLQ9UEF7 1012 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 APPL1Q9UKG1 709 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 DAAM1Q9Y4D1 1078 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 PCDHGA4Q9Y5G9 962 aa14.36□□□□□ -0.11
CPSF1-201ENST00000526271 TTC24A2A3L6 582 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 ZSCAN5CA6NGD5 496 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 NVLO15381 856 aaKnown RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 PRAMEF11O60813 436 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 RECQL5O94762 991 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 LIPCP11150 499 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 CCL4P13236 92 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 GPD1P21695 349 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 SOX5P35711 763 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 TRIM23P36406 574 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 YBEYP58557 167 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 POLR2FP61218 127 aaKnown RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 EIF3IQ13347 325 aaKnown RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 MTM1Q13496 603 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 PTPRRQ15256 657 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 TBR1Q16650 682 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 CLEC16AQ2KHT3 1053 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 AFMIDQ63HM1 303 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 LIPIQ6XZB0 460 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 PRICKLE2Q7Z3G6 844 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 SLFN11Q7Z7L1 901 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 ZNF677Q86XU0 584 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 JAMLQ86YT9 394 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 TSEN2Q8NCE0 465 aaKnown RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 CASKIN2Q8WXE0 1202 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 GLMNQ92990 594 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 USP7Q93009 1102 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 PEBP4Q96S96 227 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 SPATS2LQ9NUQ6 558 aaKnown RBP14.35□□□□□ -0.11
CPSF1-201ENST00000526271 HPCAL4Q9UM19 191 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 ATP8A1Q9Y2Q0 1164 aa14.35□□□□□ -0.11
CPSF1-201ENST00000526271 USP9YO00507 2555 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-201ENST00000526271 SIGLEC16A6NMB1 481 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 TRAFD1O14545 582 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-201ENST00000526271 SUV39H1O43463 412 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 CREB3O43889 395 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 ALPIP09923 528 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 KRT3P12035 628 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 CTSEP14091 401 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 ERCC5P28715 1186 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-201ENST00000526271 BLKP51451 505 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 MAZP56270 477 aaKnown RBP14.34□□□□□ -0.11
CPSF1-201ENST00000526271 KIAA1024LP59773 190 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 KRT31Q15323 416 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 CDKAL1Q5VV42 579 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 DNAAF5Q86Y56 855 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 NPWQ8N729 165 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 C3orf20Q8ND61 904 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 HCAR2Q8TDS4 363 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 PATE1Q8WXA2 126 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 SYT11Q9BT88 431 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 VPS16Q9H269 839 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 RDH14Q9HBH5 336 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 FAM207AQ9NSI2 230 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-201ENST00000526271 UBA2Q9UBT2 640 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-201ENST00000526271 IL17BQ9UHF5 180 aa14.34□□□□□ -0.11
CPSF1-201ENST00000526271 TMEM110-MUSTN1A8MSY1 372 aa14.33□□□□□ -0.12
CPSF1-201ENST00000526271 GLB1P16278 677 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms