RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 TSC22D2O75157 780 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 T-ENOLP0DO92 83 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 OR1D2P34982 312 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ARMC12Q5T9G4 340 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 RNASEH2BQ5TBB1 312 aaKnown RBP13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PPP4R4Q6NUP7 873 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 NEPROQ6NW34 567 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PMF1Q6P1K2 205 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 UNC5AQ6ZN44 842 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ATAD1Q8NBU5 361 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 VPS37AQ8NEZ2 397 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 HTRA1Q92743 480 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 SEPHS2Q99611 448 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 POMKQ9H5K3 350 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 BPIFA1Q9NP55 256 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 MID1IP1Q9NPA3 183 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 TAS2R13Q9NYV9 303 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 KDM3BQ7LBC6 1761 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 LINC00854A0A1B0GVQ3 168 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PTGES3LE9PB15 166 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 BTN3A1O00481 513 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PAPSS1O43252 624 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ARIH2O95376 493 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 TFPTP0C1Z6 253 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 GM2AP17900 193 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 MSH3P20585 1137 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 IL12AP29459 219 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 IL5RAQ01344 420 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PEX6Q13608 980 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 NR6A1Q15406 480 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 FNBP1LQ5T0N5 605 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 C10orf107Q8IVU9 208 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 TMEM192Q8IY95 271 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PGAM4Q8N0Y7 254 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 MED8Q96G25 268 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 NMRAL1Q9HBL8 299 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 DMAC2Q9NW81 257 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 RGS5O15539 181 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TBL1XO60907 577 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 XYLBO75191 536 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 C22orf31O95567 290 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 LRPAP1P30533 357 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TUBA1BP68363 451 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 DUSP4Q13115 394 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 CAMK2GQ13555 558 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TARBP2Q15633 366 aaKnown RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TUBA1AQ71U36 451 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 SLC22A9Q8IVM8 553 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 SLC4A11Q8NBS3 891 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 FCRL2Q96LA5 508 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 RBBP8Q99708 897 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 LPIN3Q9BQK8 851 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TEX12Q9BXU0 123 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 IL22Q9GZX6 179 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 COQ10BQ9H8M1 238 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TXNRD2Q9NNW7 524 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 PCDHA11Q9Y5I1 949 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ADAMTSL3P82987 1691 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 A0A1W2PQH9 124 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TLR5O60602 858 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 DUSP11O75319 330 aaKnown RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 PIGNO95427 931 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 NADKO95544 446 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 CTNNB1P35222 781 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ACOX1Q15067 660 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 UTS2BQ765I0 119 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 SLC44A2Q8IWA5 706 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 PHACTR4Q8IZ21 702 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 MARK4Q96L34 752 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 PRICKLE1Q96MT3 831 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 HAPLN3Q96S86 360 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 SEMA3CQ99985 751 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 SPG21Q9NZD8 308 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 CCDC167Q9P0B6 97 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 BTBD3Q9Y2F9 522 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ONECUT3O60422 494 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 CYP2C18P33260 490 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 HK2P52789 917 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 BNIP3Q12983 259 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 PCID2Q5JVF3 399 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TRMT11Q7Z4G4 463 aaKnown RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 C11orf74Q86VG3 221 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 C12orf43Q96C57 262 aaKnown RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 CERS2Q96G23 380 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 NSMCE3Q96MG7 304 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 KLHL5Q96PQ7 755 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF696Q9H7X3 374 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 EXOSC4Q9NPD3 245 aaKnown RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 TPRKBQ9Y3C4 175 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 DHX15O43143 795 aaKnown RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ENO2P09104 434 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF7P17097 686 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 CHRNB2P17787 502 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 GRK4P32298 578 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF135P52742 658 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-213ENST00000514442 SLC25A52Q3SY17 297 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 SPANXN2Q5MJ10 180 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 ARMC6Q6NXE6 501 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 CRTC3Q6UUV7 619 aa13.18□□□□□ -0.3
TCOF1-213ENST00000514442 KCTD8Q6ZWB6 473 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms