RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CHURC1-FNTBB4DL54 471 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 POLRMTO00411 1230 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 C6orf222P0C671 652 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 EIF4BP23588 611 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 MATKP42679 507 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 MAPK9P45984 424 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 KLF10Q13118 480 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 WSCD2Q2TBF2 565 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 DUPD1Q68J44 220 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 FAAH2Q6GMR7 532 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SAPCD2Q86UD0 394 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 ANKRD52Q8NB46 1076 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF420Q8TAQ5 688 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 ATXN3LQ9H3M9 355 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 TREM1Q9NP99 234 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 GRIN2AQ12879 1464 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 OR6C70A6NIJ9 312 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 TPP1O14773 563 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 AZIN1O14977 448 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 ALOX15BO15296 676 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC22A3O75751 556 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 GABBR2O75899 941 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 CCR1P32246 355 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 GRIA4P48058 902 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 RAB27AP51159 221 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 PTPN5P54829 565 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 STXBP5Q5T5C0 1151 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 AADACL4Q5VUY2 407 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 C16orf46Q6P387 395 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 CYP20A1Q6UW02 462 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 GSTCDQ8NEC7 633 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 FATE1Q969F0 183 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 DPAGT1Q9H3H5 408 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SEC14L4Q9UDX3 406 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 CDH22Q9UJ99 828 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 EDARQ9UNE0 448 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 CFAP43Q8NDM7 1665 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 L7N2F9 121 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SPARCP09486 303 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 HTR2AP28223 471 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 RTP1P59025 263 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 MYBPC1Q00872 1141 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 PTPN11Q06124 597 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 ANGEL2Q5VTE6 544 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF517Q6ZMY9 492 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 GPRIN3Q6ZVF9 776 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 PSTKQ8IV42 348 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 VMP1Q96GC9 406 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SERAC1Q96JX3 654 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 EHD4Q9H223 541 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 TLR8Q9NR97 1041 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SH3D21A4FU49 640 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 CCNYL3P0C7X3 344 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 HGFP14210 728 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 TNNI3P19429 210 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 RPL4P36578 427 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 MAPK8P45983 427 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC15A1P46059 708 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 RPP38P78345 283 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SNAPC1Q16533 368 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 NFE2Q16621 373 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 ZCCHC23Q6ZST2 131 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC4A11Q8NBS3 891 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 THAP6Q8TBB0 222 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 TRPM4Q8TD43 1214 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 CERS2Q96G23 380 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 SERPINB11Q96P15 392 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 HIPK3Q9H422 1215 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 MTMR4Q9NYA4 1195 aa11.26□□□□□ -0.61
LIMCH1-217ENST00000512946 MAST1Q9Y2H9 1570 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 KDM6AO15550 1401 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 ANKDD1BA6NHY2 528 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 RHOCP08134 193 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 NR2F1P10589 423 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 KCNA6P17658 529 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 PVALBP20472 110 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CDH5P33151 784 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 ILF3Q12906 894 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CBWD6Q4V339 395 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 OR14K1Q8NGZ2 314 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 THRSPQ92748 146 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 TCEAL4Q96EI5 215 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 TMEM176AQ96HP8 235 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 MMP19Q99542 508 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 DPP3Q9NY33 737 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 TRAF6Q9Y4K3 522 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 PCDHGB3Q9Y5G1 929 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 A0A0A0MRY4 1105 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 MSH4O15457 936 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CYP2A6P11509 494 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 TYMPP19971 482 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CD72P21854 359 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CYP4F2P78329 520 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CYP4F3Q08477 520 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 FAPQ12884 760 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 DUS1LQ6P1R4 473 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 PTF1AQ7RTS3 328 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 PHACTR4Q8IZ21 702 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 SPATA13Q96N96 652 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms