RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 UPF3BQ9BZI7 483 aaKnown RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 TMEM168Q9H0V1 697 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 PLK3Q9H4B4 646 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 CCDC86Q9H6F5 360 aaKnown RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 TREM1Q9NP99 234 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 TCF7L2Q9NQB0 619 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 SLC9A8Q9Y2E8 581 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 HRH3Q9Y5N1 445 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 OR6C76A6NM76 312 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 NUDT21O43809 227 aaKnown RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 GPRIN2O60269 458 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 RTN2O75298 545 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 GJB3O75712 270 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 UFL1O94874 794 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 DEXIO95424 95 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 EOMESO95936 686 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 IL2RAP01589 272 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 CAPNS1P04632 268 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 SERPIND1P05546 499 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 CD72P21854 359 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 HNRNPA2B1P22626 353 aaKnown RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 THBS4P35443 961 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 SESN2P58004 480 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 MERTKQ12866 999 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 ZSCAN26Q16670 478 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 CYP2A13Q16696 494 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 WSCD2Q2TBF2 565 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 TRIM60Q495X7 471 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 GPAT3Q53EU6 434 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 SULT1C3Q6IMI6 304 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 FAM228AQ86W67 206 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 CDAN1Q8IWY9 1227 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 FAM43AQ8N2R8 423 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 TMEM102Q8N9M5 508 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 DAGLBQ8NCG7 672 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 AMDHD1Q96NU7 426 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 ORAI3Q9BRQ5 295 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 NAA11Q9BSU3 229 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 RNF26Q9BY78 433 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 REXO4Q9GZR2 422 aaKnown RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 MTFR1LQ9H019 292 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 SERHL2Q9H4I8 314 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 ZNF576Q9H609 170 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 RNPEPL1Q9HAU8 725 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 A1CFQ9NQ94 594 aaKnown RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 CHST7Q9NS84 486 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 THEGQ9P2T0 379 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 ADGRE2Q9UHX3 823 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 IPO11Q9UI26 975 aaKnown RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 LCMT1Q9UIC8 334 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 MID2Q9UJV3 735 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 MKLN1Q9UL63 735 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 L1RE1Q9UN81 338 aa3.95□□□□□ -1.78
NEDD4-209ENST00000508871 MRPS7Q9Y2R9 242 aaKnown RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 POLR3KQ9Y2Y1 108 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-209ENST00000508871 POTEB3A0JP26 581 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 ZNF24P17028 368 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 GPD2P43304 727 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 NPBWR1P48145 328 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 CACNA2D1P54289 1103 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 ST8SIA6P61647 398 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 UBAP2LQ14157 1087 aaKnown RBP3.94□□□□□ -1.78
NEDD4-209ENST00000508871 ACKR1Q16570 336 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 C3orf36Q3SXR2 165 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 KRT71Q3SY84 523 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 MGAT5BQ3V5L5 792 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 ARMC12Q5T9G4 340 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 POTEBQ6S5H4 581 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 ILDR2Q71H61 639 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 CYB5R4Q7L1T6 521 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 NLRP8Q86W28 1048 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 NRROSQ86YC3 692 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 TDRPQ86YL5 185 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 CYP4X1Q8N118 509 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 THEM5Q8N1Q8 247 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 NHLRC2Q8NBF2 726 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 FAM149B1Q96BN6 582 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 TSPAN17Q96FV3 270 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 ADAD1Q96M93 576 aaKnown RBP3.94□□□□□ -1.78
NEDD4-209ENST00000508871 QRFPRQ96P65 431 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 TRNT1Q96Q11 434 aaKnown RBP3.94□□□□□ -1.78
NEDD4-209ENST00000508871 SEPHS2Q99611 448 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 PHB2Q99623 299 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 SPATA16Q9BXB7 569 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 SIK2Q9H0K1 926 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 FOXP1Q9H334 677 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-209ENST00000508871 CD209Q9NNX6 404 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 TFCP2L1Q9NZI6 479 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 RPH3AQ9Y2J0 694 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-209ENST00000508871 PCDHB2Q9Y5E7 798 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 A8MUA0 341 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 FPGTO14772 594 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 GPR32O75388 356 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 CTDNEP1O95476 244 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 TOP3BO95985 862 aaKnown RBP3.94□□□□□ -1.78
NEDD4-209ENST00000508871 EBLN1P0CF75 366 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 C8orf89P0DMQ9 161 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 RALAP11233 206 aa3.94□□□□□ -1.78
NEDD4-209ENST00000508871 GYG1P46976 350 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms