RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ASCL2Q99929 193 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 TTC12Q9H892 705 aaPredicted RBP2.78□□□□□ -1.96
NUP54-208ENST00000508604 PCDH9Q9HC56 1237 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 C1RLQ9NZP8 487 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 FNIP2Q9P278 1114 aa2.78□□□□□ -1.96
NUP54-208ENST00000508604 FAM90A20PA6NIJ5 464 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 SKAP2O75563 359 aaPredicted RBP2.77□□□□□ -1.97
NUP54-208ENST00000508604 CHRNB4P30926 498 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 LMO4P61968 165 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 IRX1P78414 480 aaPredicted RBP2.77□□□□□ -1.97
NUP54-208ENST00000508604 TBL3Q12788 808 aaKnown RBP2.77□□□□□ -1.97
NUP54-208ENST00000508604 HLTFQ14527 1009 aaKnown RBP eCLIP2.77□□□□□ -1.97
NUP54-208ENST00000508604 EFNB3Q15768 340 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 CTF1Q16619 201 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 SFMBT2Q5VUG0 894 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 BSPRYQ5W0U4 402 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 ZNF852Q6ZMS4 543 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 RASGRP2Q7LDG7 609 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 DSELQ8IZU8 1212 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 PARP16Q8N5Y8 322 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 GDPD5Q8WTR4 605 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 GOLGA1Q92805 767 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 ERGIC1Q969X5 290 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 ZC3HAV1LQ96H79 300 aaKnown RBP2.77□□□□□ -1.97
NUP54-208ENST00000508604 AMDHD2Q9Y303 409 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 CACNA1FO60840 1977 aa2.77□□□□□ -1.97
NUP54-208ENST00000508604 E7EVH7 732 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 HLA-DOBP13765 273 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SP100P23497 879 aaPredicted RBP2.76□□□□□ -1.97
NUP54-208ENST00000508604 EEF1A1P68104 462 aaKnown RBP2.76□□□□□ -1.97
NUP54-208ENST00000508604 PFKFB4Q16877 469 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 ESCO2Q56NI9 601 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 EEF1A1P5Q5VTE0 462 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 PRSS45Q7RTY3 260 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 HERC6Q8IVU3 1022 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 RNF113BQ8IZP6 322 aaKnown RBP2.76□□□□□ -1.97
NUP54-208ENST00000508604 ZNF524Q96C55 264 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 ATOH8Q96SQ7 321 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 CTDSP1Q9GZU7 261 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 CSTL1Q9H114 145 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 WDR13Q9H1Z4 485 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 UPF2Q9HAU5 1272 aaKnown RBP2.76□□□□□ -1.97
NUP54-208ENST00000508604 MAP3K20Q9NYL2 800 aaKnown RBP2.76□□□□□ -1.97
NUP54-208ENST00000508604 PDS5AQ29RF7 1337 aaKnown RBP2.76□□□□□ -1.97
NUP54-208ENST00000508604 KRT38O76015 456 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 IGLV1-44P01699 117 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 CSF1P09603 554 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SRD5A1P18405 259 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 PPM1AP35813 382 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SEC61BP60468 96 aaKnown RBP2.76□□□□□ -1.97
NUP54-208ENST00000508604 PICALMQ13492 652 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SOWAHAQ2M3V2 549 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 TCTE1Q5JU00 501 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SH2D4BQ5SQS7 431 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 RGMBQ6NW40 437 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 B3GNT6Q6ZMB0 384 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 P2RY8Q86VZ1 359 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 TMEM219Q86XT9 240 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SCCPDHQ8NBX0 429 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 KLHDC9Q8NEP7 349 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SLC20A1Q8WUM9 679 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 PPM1EQ8WY54 764 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SGCZQ96LD1 299 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 ZNF354BQ96LW1 612 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 CNGB3Q9NQW8 809 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 HCFC1R1Q9NWW0 138 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 CISD1Q9NZ45 108 aaKnown RBP2.76□□□□□ -1.97
NUP54-208ENST00000508604 CDC23Q9UJX2 597 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 PADI1Q9ULC6 663 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 SUFUQ9UMX1 484 aa2.76□□□□□ -1.97
NUP54-208ENST00000508604 ARHGAP10A1A4S6 786 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 HHLA1C9JL84 531 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 H0Y3Z8 333 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 PATE4P0C8F1 98 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 CLCNKAP51800 687 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 YWHAZP63104 245 aaKnown RBP2.75□□□□□ -1.97
NUP54-208ENST00000508604 SMAD1Q15797 465 aaKnown RBP2.75□□□□□ -1.97
NUP54-208ENST00000508604 KRTAP13-3Q3SY46 172 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 LCE3AQ5TA76 89 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 SUSD1Q6UWL2 747 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 GFRALQ6UXV0 394 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 KSR2Q6VAB6 950 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 SRLQ86TD4 932 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 GJC3Q8NFK1 279 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 OR6Y1Q8NGX8 325 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 KTI12Q96EK9 354 aaPredicted RBP2.75□□□□□ -1.97
NUP54-208ENST00000508604 LRR1Q96L50 414 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 ZNF570Q96NI8 536 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 EGFL8Q99944 293 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 TAF1DQ9H5J8 278 aaPredicted RBP2.75□□□□□ -1.97
NUP54-208ENST00000508604 SMYD2Q9NRG4 433 aa2.75□□□□□ -1.97
NUP54-208ENST00000508604 GOLGA6L9A6NEM1 432 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 HMX3A6NHT5 357 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 SMIM1B2RUZ4 78 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 PSMD14O00487 310 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 WDR1O75083 606 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 PTPN2P17706 415 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 NR1D1P20393 614 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 RRM1P23921 792 aa2.74□□□□□ -1.97
NUP54-208ENST00000508604 HNF1BP35680 557 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms