RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 SCRN2Q96FV2 425 aa9.19□□□□□ -0.94
NUP54-207ENST00000508583 LENG8Q96PV6 779 aaPredicted RBP9.19□□□□□ -0.94
NUP54-207ENST00000508583 FCRL5Q96RD9 977 aa9.19□□□□□ -0.94
NUP54-207ENST00000508583 NAPGQ99747 312 aaPredicted RBP9.19□□□□□ -0.94
NUP54-207ENST00000508583 SLC17A9Q9BYT1 436 aa9.19□□□□□ -0.94
NUP54-207ENST00000508583 GBA3Q9H227 469 aa9.19□□□□□ -0.94
NUP54-207ENST00000508583 TM9SF3Q9HD45 589 aa9.19□□□□□ -0.94
NUP54-207ENST00000508583 TTC7AQ9ULT0 858 aaPredicted RBP9.19□□□□□ -0.94
NUP54-207ENST00000508583 PYCARDQ9ULZ3 195 aa9.19□□□□□ -0.94
NUP54-207ENST00000508583 ZNF148Q9UQR1 794 aa9.19□□□□□ -0.94
NUP54-207ENST00000508583 ATXN2Q99700 1313 aaKnown RBP9.19□□□□□ -0.94
NUP54-207ENST00000508583 ZFHX2Q9C0A1 2572 aaPredicted RBP9.18□□□□□ -0.94
NUP54-207ENST00000508583 C5orf60A6NFR6 353 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 IGLON5A6NGN9 336 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 CAPN8A6NHC0 703 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 A6NNZ2 444 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 C10orf142B7Z368 130 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 FPGTO14772 594 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 VILLO15195 856 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 YKT6O15498 198 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 PSMD3O43242 534 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 LIASO43766 372 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 PYGLP06737 847 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 ITGAVP06756 1048 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 PRLRP16471 622 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 HLA-DPA1P20036 260 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 MAOBP27338 520 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 SKOR1P84550 965 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 CDK18Q07002 472 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 NIPAL4Q0D2K0 466 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 AGERQ15109 404 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 ANKRD20A2Q5SQ80 823 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 ANKRD20A1Q5TYW2 823 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 ANKRD20A3Q5VUR7 823 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 ZNF567Q8N184 647 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.18□□□□□ -0.94
NUP54-207ENST00000508583 CNTD1Q8N815 330 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 MFSD2AQ8NA29 543 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 ATL2Q8NHH9 583 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 CCHCR1Q8TD31 782 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 RMDN1Q96DB5 314 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 MCCC1Q96RQ3 725 aaPredicted RBP9.18□□□□□ -0.94
NUP54-207ENST00000508583 OSBPL9Q96SU4 736 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 RBM15Q96T37 977 aaKnown RBP eCLIP9.18□□□□□ -0.943e-11■■■■■ 43.2
NUP54-207ENST00000508583 HERPUD2Q9BSE4 406 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 WRAP53Q9BUR4 548 aaKnown RBP9.18□□□□□ -0.94
NUP54-207ENST00000508583 MLPHQ9BV36 600 aaPredicted RBP9.18□□□□□ -0.94
NUP54-207ENST00000508583 C1QTNF2Q9BXJ5 285 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 CEP41Q9BYV8 373 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 TRABDQ9H4I3 376 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 CAPN10Q9HC96 672 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 RAD18Q9NS91 495 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 FEZ2Q9UHY8 353 aaPredicted RBP9.18□□□□□ -0.94
NUP54-207ENST00000508583 SNX12Q9UMY4 172 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 CHKBQ9Y259 395 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 PPIL1Q9Y3C6 166 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 HS3ST3A1Q9Y663 406 aa9.18□□□□□ -0.94
NUP54-207ENST00000508583 ZNF292O60281 2723 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 A0A0J9YYE9 177 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 TTC24A2A3L6 582 aaPredicted RBP9.17□□□□□ -0.94
NUP54-207ENST00000508583 ERI2A8K979 691 aaKnown RBP9.17□□□□□ -0.94
NUP54-207ENST00000508583 ANKRD66B4E2M5 251 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 ARHGAP33O14559 1287 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 SLC31A1O15431 190 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 FZD6O60353 706 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 PMPCBO75439 489 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 GCATO75600 419 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 GJB3O75712 270 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 NDST3O95803 873 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 TRBC1P01850 177 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 TUBB4AP04350 444 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 ATP1A1P05023 1023 aaKnown RBP9.17□□□□□ -0.94
NUP54-207ENST00000508583 C6P13671 934 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 NFKB1P19838 968 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 CXCR5P32302 372 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 FDFT1P37268 417 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 RABIFP47224 123 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 LIG3P49916 1009 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 PTK2BQ14289 1009 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 LRRC14Q15048 493 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 ACOX1Q15067 660 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 OASLQ15646 514 aaKnown RBP9.17□□□□□ -0.94
NUP54-207ENST00000508583 CCDC6Q16204 474 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 PCSK7Q16549 785 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 PARP6Q2NL67 630 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 INAVAQ3KP66 663 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 LRRC73Q5JTD7 316 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 SEL1L3Q68CR1 1132 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 LIPIQ6XZB0 460 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 KYAT3Q6YP21 454 aaKnown RBP9.17□□□□□ -0.94
NUP54-207ENST00000508583 GSTA5Q7RTV2 222 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 RASGEF1CQ8N431 466 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 DCLK2Q8N568 766 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 FAM71DQ8N9W8 422 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 TMEM145Q8NBT3 493 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 LPCAT1Q8NF37 534 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 C1orf216Q8TAB5 229 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 NETO1Q8TDF5 533 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 ACTRT1Q8TDG2 376 aa9.17□□□□□ -0.94
NUP54-207ENST00000508583 GRK7Q8WTQ7 553 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms