RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 RFC2P35250 354 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 ARCN1P48444 511 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 ZNF846Q147U1 533 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 SLC10A6Q3KNW5 377 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 ZNF618Q5T7W0 954 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 PRMT9Q6P2P2 845 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 PIGZQ86VD9 579 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 SFRP1Q8N474 314 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 MINDY1Q8N5J2 469 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 BPIFB6Q8NFQ5 453 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 APOL2Q9BQE5 337 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 LHPPQ9H008 270 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 GPRC5DQ9NZD1 345 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 ZNF639Q9UID6 485 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 SCAF8Q9UPN6 1271 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 NME7Q9Y5B8 376 aa17.18■□□□□ 0.34
SQSTM1-211ENST00000506690 H0YAE9 185 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 JRKO75564 520 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 CYP2C8P10632 490 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 GFAPP14136 432 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 GPX3P22352 226 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 YWHAQP27348 245 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 AXLP30530 894 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 RBP5P82980 135 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 PRPSAP1Q14558 356 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 TMEM132DQ14C87 1099 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 TMEM132BQ14DG7 1078 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 PHKG1Q16816 387 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 UGP2Q16851 508 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 EML3Q32P44 896 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 NEPROQ6NW34 567 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 CNTN4Q8IWV2 1026 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 MINDY2Q8NBR6 621 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 MAGEE2Q8TD90 523 aaPredicted RBP17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 HEXDCQ8WVB3 486 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 MRPL45Q9BRJ2 306 aaKnown RBP17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 HGH1Q9BTY7 390 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 KIFC1Q9BW19 673 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 GBA3Q9H227 469 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 ACAD9Q9H845 621 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 TMPRSS4Q9NRS4 437 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 TRAF6Q9Y4K3 522 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 TLL2Q9Y6L7 1015 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 BPTFQ12830 3046 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 FAM95CA0A1B0GW59 222 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 DCLK1O15075 740 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 ARPC2O15144 300 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 B4GAT1O43505 415 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 KDM1AO60341 852 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 S100A1P23297 94 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 HPCAL1P37235 193 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 BFSP2Q13515 415 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 AGAP7PQ5VUJ5 663 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 BROXQ5VW32 411 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 C7orf31Q8N865 590 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 NRBF2Q96F24 287 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 FAM167AQ96KS9 214 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 INTS10Q9NVR2 710 aaKnown RBP17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 CMTM6Q9NX76 183 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 ADAMTS5Q9UNA0 930 aa17.17■□□□□ 0.34
SQSTM1-211ENST00000506690 FXYD1O00168 92 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 WNT10BO00744 389 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 MYL3P08590 195 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 ELK4P28324 431 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 RPL34P49207 117 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 GALNT1Q10472 559 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 KCNJ8Q15842 424 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 CPB2Q96IY4 423 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 DPP3Q9NY33 737 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 DNMT3BQ9UBC3 853 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 SLC27A5Q9Y2P5 690 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 PHIPQ8WWQ0 1821 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 H0Y858 1186 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 SYNCRIPO60506 623 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 ABCB7O75027 752 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 UGT2B4P06133 528 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 ALOX5P09917 674 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 ALDOCP09972 364 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 LCP1P13796 627 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 KCNA5P22460 613 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 EEF1B2P24534 225 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 LDLRAP1Q5SW96 308 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 DENND6AQ8IWF6 608 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 PAPD5Q8NDF8 572 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 FKBP10Q96AY3 582 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 IL1RL2Q9HB29 575 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 FBRSL1Q9HCM7 1045 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 TLR9Q9NR96 1032 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 NDUFAF1Q9Y375 327 aa17.16■□□□□ 0.34
SQSTM1-211ENST00000506690 ZFC3H1O60293 1989 aaKnown RBP17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 A0A087X1B8 175 aa17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 PFDN6O15212 129 aa17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 SLC6A2P23975 617 aa17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 NFKBIAP25963 317 aa17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 NOS2P35228 1153 aa17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 MATKP42679 507 aa17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 KPNA2P52292 529 aaKnown RBP17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 PLA2G16P53816 162 aa17.15■□□□□ 0.34
SQSTM1-211ENST00000506690 SNX17Q15036 470 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms