RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 CCDC25Q86WR0 208 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 ARHGEF19Q8IW93 802 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 CCAR2Q8N163 923 aaKnown RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 DPP10Q8N608 796 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 PI4KAP1Q8N8J0 262 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 CHST13Q8NET6 341 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 NEU4Q8WWR8 484 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 KRT35Q92764 455 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 PTP4A1Q93096 173 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 SSBP3Q9BWW4 388 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 PARPBPQ9NWS1 579 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 AURKAIP1Q9NWT8 199 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 ADPRHL2Q9NX46 363 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 CHCHD3Q9NX63 227 aaKnown RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 GAR1Q9NY12 217 aaKnown RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 BTBD3Q9Y2F9 522 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 CYP2D7A0A087X1C5 515 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 GPR75-ASB3A0A0A6YYF3 556 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 A4D1N5 150 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 HSPB2A8KAH6 182 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 KLRF2D3W0D1 207 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ZC3H11AO75152 810 aaKnown RBP eCLIP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ZWINTO95229 277 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ST6GAL1P15907 406 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 YWHAQP27348 245 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 EPHB2P29323 1055 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 PTGER1P34995 402 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 SCN1BQ07699 218 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 MTA1Q13330 715 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 HSPB2Q16082 182 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 TCTN1Q2MV58 587 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 DNAJC21Q5F1R6 531 aaKnown RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 VWA5B1Q5TIE3 1220 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 QSOX2Q6ZRP7 698 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 SLC29A4Q7RTT9 530 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ADCK2Q7Z695 626 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 HSCBQ8IWL3 235 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 UEVLDQ8IX04 471 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 SIX6OS1Q8N1H7 587 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 CAMKVQ8NCB2 501 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 LPGAT1Q92604 370 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 PIGKQ92643 395 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 KAT2BQ92831 832 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 MOAP1Q96BY2 351 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 HDAC11Q96DB2 347 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 CEP295NLQ96MC4 621 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 AGAP2Q99490 1192 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 FERMT1Q9BQL6 677 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 MXRA8Q9BRK3 442 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 MAGEE1Q9HCI5 957 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 PAG1Q9NWQ8 432 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 HAO2Q9NYQ3 351 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 GDE1Q9NZC3 331 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 CEPT1Q9Y6K0 416 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 MST1RQ04912 1400 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF644Q9H582 1327 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 A0A1W2PR77 199 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 RRHO14718 337 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 PLRG1O43660 514 aaKnown RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 CD63P08962 238 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ACTN1P12814 892 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 SHMT1P34896 483 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 RYKP34925 604 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 GRIA3P42263 894 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 SOX2P48431 317 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ALDH3A2P51648 485 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ECT2LQ008S8 904 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ITGADQ13349 1161 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 PTK6Q13882 451 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 PRKD1Q15139 912 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 CDONQ4KMG0 1287 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 C6orf141Q5SZD1 244 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ABHD17BQ5VST6 288 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 Q6ZNX1 250 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 TAOK1Q7L7X3 1001 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 OTOAQ7RTW8 1153 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 SDCCAG8Q86SQ7 713 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 TUSC5Q8IXB3 177 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 RNF168Q8IYW5 571 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 GUF1Q8N442 669 aaKnown RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 XXYLT1Q8NBI6 393 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 GJC3Q8NFK1 279 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ZFPM2Q8WW38 1151 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 KAT2AQ92830 837 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 EXOC4Q96A65 974 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 DAZAP1Q96EP5 407 aaKnown RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 FCRL5Q96RD9 977 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 SEPT5Q99719 369 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 TMEM47Q9BQJ4 181 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 GATA5Q9BWX5 397 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 FUT8Q9BYC5 575 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 DENND2DQ9H6A0 471 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 WDR6Q9NNW5 1121 aaKnown RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 MBNL1Q9NR56 388 aaKnown RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 CRNNQ9UBG3 495 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 ODF2LQ9ULJ1 636 aa4.77□□□□□ -1.65
VPS13A-212ENST00000493341 EXO1Q9UQ84 846 aaKnown RBP4.77□□□□□ -1.65
VPS13A-212ENST00000493341 TCRBV5S1A1TA0A578 114 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 PIPSLA2A3N6 862 aa4.76□□□□□ -1.65
VPS13A-212ENST00000493341 OR6C76A6NM76 312 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms