RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 SERPING1P05155 500 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 ELFN1P0C7U0 828 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 AMPD1P23109 780 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 LSSP48449 732 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 SRP54P61011 504 aaKnown RBP22.72■■□□□ 1.23
PTPN4-211ENST00000488279 GABREP78334 506 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 MTM1Q13496 603 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 ISXQ2M1V0 245 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 ALG11Q2TAA5 492 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 ZNF578Q96N58 590 aaPredicted RBP22.72■■□□□ 1.23
PTPN4-211ENST00000488279 THAP2Q9H0W7 228 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 IP6K2Q9UHH9 426 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 PADI4Q9UM07 663 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 IGSF10Q6WRI0 2623 aa22.72■■□□□ 1.23
PTPN4-211ENST00000488279 CELA2BP08218 269 aaPredicted RBP22.71■■□□□ 1.23
PTPN4-211ENST00000488279 RARAP10276 462 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 TCF4P15884 667 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 HSPA9P38646 679 aaKnown RBP22.71■■□□□ 1.23
PTPN4-211ENST00000488279 PBX1P40424 430 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 ZBED6P86452 979 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 RALGDSQ12967 914 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 ZNF235Q14590 738 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 LIPIQ6XZB0 460 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 RBM44Q6ZP01 1051 aaKnown RBP22.71■■□□□ 1.23
PTPN4-211ENST00000488279 DPPA4Q7L190 304 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 GKN2Q86XP6 184 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 CPLX3Q8WVH0 158 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 IQCDQ96DY2 449 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 WDR92Q96MX6 357 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 CSPG4P5Q96PW8 444 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 POLR1BQ9H9Y6 1135 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 GULP1Q9UBP9 304 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 KLQ9UEF7 1012 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 CAPN11Q9UMQ6 739 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 ATRXP46100 2492 aa22.71■■□□□ 1.23
PTPN4-211ENST00000488279 A0A1W2PQ67 120 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 GOLGA6L19H0YKK7 550 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 TCEA3O75764 348 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 DXOO77932 396 aaKnown RBP22.7■■□□□ 1.22
PTPN4-211ENST00000488279 TNFP01375 233 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 COL9A2Q14055 689 aaPredicted RBP22.7■■□□□ 1.22
PTPN4-211ENST00000488279 NFKBIBQ15653 356 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 PERM1Q5SV97 790 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 CRTC1Q6UUV9 634 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 BBS5Q8N3I7 341 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 ARL10Q8N8L6 244 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 NIPA2Q8N8Q9 360 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 PLA2G15Q8NCC3 412 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 WDR48Q8TAF3 677 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 NSMCE1Q8WV22 266 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 TEKT4Q8WW24 435 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 NUP85Q9BW27 656 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 ETNK2Q9NVF9 386 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 ANAPC7Q9UJX3 599 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 BPTFQ12830 3046 aa22.7■■□□□ 1.22
PTPN4-211ENST00000488279 TTC24A2A3L6 582 aaPredicted RBP22.69■■□□□ 1.22
PTPN4-211ENST00000488279 A8MX80 341 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 MYO1FO00160 1098 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 CACNB4O00305 520 aaPredicted RBP22.69■■□□□ 1.22
PTPN4-211ENST00000488279 SERPINB6P35237 376 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 CCDC173Q0VFZ6 552 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 TCEA2Q15560 299 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 TXNRD3NBQ6F5E7 133 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 ZNF248Q8NDW4 579 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 PCDH19Q8TAB3 1148 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 SPOCK2Q92563 424 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 BTBD6Q96KE9 485 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 NSMCE3Q96MG7 304 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 CCDC3Q9BQI4 270 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 SIRPGQ9P1W8 387 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 LUC7L2Q9Y383 392 aaKnown RBP22.69■■□□□ 1.22
PTPN4-211ENST00000488279 PCDHGC4Q9Y5F7 938 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 DGKBQ9Y6T7 804 aa22.69■■□□□ 1.22
PTPN4-211ENST00000488279 SMG1Q96Q15 3661 aaKnown RBP22.69■■□□□ 1.22
PTPN4-211ENST00000488279 A0A087X0T9 212 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 HTRA2O43464 458 aaPredicted RBP22.68■■□□□ 1.22
PTPN4-211ENST00000488279 MAFKO60675 156 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 SOCS5O75159 536 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 PEX11BO96011 259 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 CYP1A2P05177 515 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 HOXC4P09017 264 aaPredicted RBP22.68■■□□□ 1.22
PTPN4-211ENST00000488279 FAM228BP0C875 321 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 KELP23276 732 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 NFKBIAP25963 317 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 PCBP4P57723 403 aaKnown RBP22.68■■□□□ 1.22
PTPN4-211ENST00000488279 ERVPABLB-1P60509 514 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 ACOX1Q15067 660 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 ATPAF2Q8N5M1 289 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 OR56A4Q8NGH8 313 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 PDCD6IPQ8WUM4 868 aaKnown RBP22.68■■□□□ 1.22
PTPN4-211ENST00000488279 FUBP1Q96AE4 644 aaKnown RBP22.68■■□□□ 1.22
PTPN4-211ENST00000488279 ATXN7L3BQ96GX2 97 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 NUDCD1Q96RS6 583 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 RBM15Q96T37 977 aaKnown RBP eCLIP22.68■■□□□ 1.22
PTPN4-211ENST00000488279 LGMNQ99538 433 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 PRORYQ9H606 182 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 NOD2Q9HC29 1040 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 PCDH18Q9HCL0 1135 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 GPR34Q9UPC5 381 aa22.68■■□□□ 1.22
PTPN4-211ENST00000488279 RAI2Q9Y5P3 530 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms