RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ACAP2Q15057 778 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 RYBPQ8N488 228 aaPredicted RBP18.03■□□□□ 0.48
VIM-206ENST00000487938 TMEM102Q8N9M5 508 aaPredicted RBP18.03■□□□□ 0.48
VIM-206ENST00000487938 GPR152Q8TDT2 470 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 DLG3Q92796 817 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 CCDC126Q96EE4 140 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 ZCWPW1Q9H0M4 648 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 GSTO2Q9H4Y5 243 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 RRAGCQ9HB90 399 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 FBRSL1Q9HCM7 1045 aaKnown RBP18.03■□□□□ 0.48
VIM-206ENST00000487938 ATP13A1Q9HD20 1204 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 CACNA2D2Q9NY47 1150 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 LZTS1Q9Y250 596 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 AP1G1O43747 822 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 DUSP11O75319 330 aaKnown RBP18.02■□□□□ 0.48
VIM-206ENST00000487938 TBX18O95935 607 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 CDH13P55290 713 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 TRIM25Q14258 630 aaKnown RBP18.02■□□□□ 0.48
VIM-206ENST00000487938 SQLEQ14534 574 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 CST9Q5W186 159 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 CATSPER1Q8NEC5 780 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 NAT14Q8WUY8 206 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 SUSD3Q96L08 255 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 SERPINB11Q96P15 392 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 UTP6Q9NYH9 597 aaKnown RBP18.02■□□□□ 0.48
VIM-206ENST00000487938 MIA3Q5JRA6 1907 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 BRCA2P51587 3418 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 NLRC5Q86WI3 1866 aa18.02■□□□□ 0.48
VIM-206ENST00000487938 SNUPNO95149 360 aaKnown RBP18.02■□□□□ 0.47
VIM-206ENST00000487938 S1PR4O95977 384 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 PRAMEP78395 509 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 SIRPB2Q5JXA9 342 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 CYP2R1Q6VVX0 501 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 AFAP1L2Q8N4X5 818 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 OR52K2Q8NGK3 314 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 LPGAT1Q92604 370 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 ASB9Q96DX5 294 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 TSPAN17Q96FV3 270 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 FAR2Q96K12 515 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 C1orf74Q96LT6 269 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 SP110Q9HB58 689 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 EPS15L1Q9UBC2 864 aa18.02■□□□□ 0.47
VIM-206ENST00000487938 UXTQ9UBK9 157 aaPredicted RBP18.02■□□□□ 0.47
VIM-206ENST00000487938 TDRD15B5MCY1 1934 aaKnown RBP18.01■□□□□ 0.47
VIM-206ENST00000487938 B4GALT3O60512 393 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 CSPG5O95196 566 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 SNRPB2P08579 225 aaKnown RBP18.01■□□□□ 0.47
VIM-206ENST00000487938 IMPDH1P20839 514 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 GRK4P32298 578 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 TBX4P57082 545 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 USP46P62068 366 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 MYBPC1Q00872 1141 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 EFEMP1Q12805 493 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 PSMD5Q16401 504 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 NRF1Q16656 503 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 MS4A13Q5J8X5 152 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 ISCA2Q86U28 154 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 TMEM126BQ8IUX1 230 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 LRRC49Q8IUZ0 686 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 UMODL1-AS1Q8N2C9 162 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 LRTOMTQ8WZ04 291 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 NCSTNQ92542 709 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 NMD3Q96D46 503 aaKnown RBP18.01■□□□□ 0.47
VIM-206ENST00000487938 C3orf30Q96M34 536 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 UNC93B1Q9H1C4 597 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 PTPRDP23468 1912 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 PRORSD1PA6NEY8 169 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 WASH4PA8MWX3 477 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 ATP6V1B1P15313 513 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 CALRP27797 417 aaKnown RBP18.01■□□□□ 0.47
VIM-206ENST00000487938 NME5P56597 212 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 CYHR1Q6ZMK1 362 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 CIR1Q86X95 450 aaPredicted RBP18.01■□□□□ 0.47
VIM-206ENST00000487938 PGBD5Q8N414 524 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 IGSF8Q969P0 613 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 PTERQ96BW5 349 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 TBATAQ96M53 351 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 RANBP9Q96S59 729 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 SLC39A3Q9BRY0 314 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 ZYG11BQ9C0D3 744 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 GMPR2Q9P2T1 348 aaKnown RBP18.01■□□□□ 0.47
VIM-206ENST00000487938 TLR6Q9Y2C9 796 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 AP4S1Q9Y587 144 aa18.01■□□□□ 0.47
VIM-206ENST00000487938 MROH6A6NGR9 719 aa18■□□□□ 0.47
VIM-206ENST00000487938 PPP6CO00743 305 aa18■□□□□ 0.47
VIM-206ENST00000487938 TNPO2O14787 897 aaKnown RBP18■□□□□ 0.47
VIM-206ENST00000487938 TRPA1O75762 1119 aa18■□□□□ 0.47
VIM-206ENST00000487938 CLPTM1O96005 669 aa18■□□□□ 0.47
VIM-206ENST00000487938 TFAP2AP05549 437 aa18■□□□□ 0.47
VIM-206ENST00000487938 HMBSP08397 361 aa18■□□□□ 0.47
VIM-206ENST00000487938 RAB27AP51159 221 aa18■□□□□ 0.47
VIM-206ENST00000487938 DSC3Q14574 896 aa18■□□□□ 0.47
VIM-206ENST00000487938 LPIN1Q14693 890 aa18■□□□□ 0.47
VIM-206ENST00000487938 SLC14A2Q15849 920 aa18■□□□□ 0.47
VIM-206ENST00000487938 MGAT5BQ3V5L5 792 aa18■□□□□ 0.47
VIM-206ENST00000487938 PITRM1Q5JRX3 1037 aa18■□□□□ 0.47
VIM-206ENST00000487938 ZNF678Q5SXM1 525 aa18■□□□□ 0.47
VIM-206ENST00000487938 ZNF280BQ86YH2 543 aa18■□□□□ 0.47
VIM-206ENST00000487938 SLC22A9Q8IVM8 553 aa18■□□□□ 0.47
VIM-206ENST00000487938 ZNF683Q8IZ20 524 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms