RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 SLC12A1Q13621 1099 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 DPYSL2Q16555 572 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 SMTNL2Q2TAL5 461 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 FBXO43Q4G163 708 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 PPP6R3Q5H9R7 873 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 KCNT1Q5JUK3 1230 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 LRRC38Q5VT99 294 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 FYB2Q5VWT5 728 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 FBXL22Q6P050 247 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 CHST9Q7L1S5 443 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 ZNF765Q7L2R6 523 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 ANKS1BQ7Z6G8 1248 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 ZNF354CQ86Y25 554 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 RBM12BQ8IXT5 1001 aaKnown RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 AHI1Q8N157 1196 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 CFAP52Q8N1V2 620 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 NAT16Q8N8M0 369 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 WFIKKN2Q8TEU8 576 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 ZNF483Q8TF39 744 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 KISS1RQ969F8 398 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 RBM41Q96IZ5 413 aaKnown RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 ANKRD27Q96NW4 1050 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 PNKPQ96T60 521 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 PRMT1Q99873 361 aaKnown RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 P2RY13Q9BPV8 354 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 IER2Q9BTL4 223 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 DHRS4Q9BTZ2 278 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 CALN1Q9BXU9 219 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 PRDM16Q9HAZ2 1276 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 PLK2Q9NYY3 685 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 PRR13Q9NZ81 148 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 RCOR3Q9P2K3 495 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 XPO7Q9UIA9 1087 aaKnown RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 TFR2Q9UP52 801 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 PRKAB1Q9Y478 270 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 ALG6Q9Y672 507 aa6.31□□□□□ -1.4
SF3B1-209ENST00000479532 SPTBN5Q9NRC6 3674 aaKnown RBP6.31□□□□□ -1.4
SF3B1-209ENST00000479532 XIRP2A4UGR9 3374 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 IGLV3-10A0A075B6K4 115 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 KANSL1LA0AUZ9 987 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 SHISA3A0PJX4 238 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 LRRD1A4D1F6 860 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 GRID2IPA4D2P6 1211 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 TBC1D3BA6NDS4 549 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 DRGXA6NNA5 263 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 ZNF487B1APH4 448 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 PI4K2BG5E9Z4 385 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 NPC1O15118 1278 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 TIMM44O43615 452 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 TULP3O75386 442 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 SNUPNO95149 360 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 PRAMEF1O95521 474 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 TSPAN15O95858 294 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 ASLP04424 464 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 CAPNS1P04632 268 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 ATP5BP06576 529 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 RNASE1P07998 156 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 PABPC1P11940 636 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 PECAM1P16284 738 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 ZFXP17010 805 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 POLR2EP19388 210 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 FUT4P22083 530 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 CTNNA2P26232 953 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 HOXD9P28356 352 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 SLC8A1P32418 973 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 CTNNA1P35221 906 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 NNMTP40261 264 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 TNFRSF4P43489 277 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 HCAR3P49019 387 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 GALK1P51570 392 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 STARD6P59095 220 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 TAS2R40P59535 323 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 ST8SIA6P61647 398 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 RPS24P62847 133 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 KDSRQ06136 332 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 SULT2A1Q06520 285 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 IFFO1Q0D2I5 559 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 DMC1Q14565 340 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 UBXN2BQ14CS0 331 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 EIF4HQ15056 248 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 PON2Q15165 354 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 ERCC6LQ2NKX8 1250 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 C5orf22Q49AR2 442 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 CYP27C1Q4G0S4 372 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 RAB6CQ53S08 254 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 DGKKQ5KSL6 1271 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 SEL1L2Q5TEA6 688 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 DAB2IPQ5VWQ8 1189 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 RNF219Q5W0B1 726 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 GTF2IRD2BQ6EKJ0 949 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 ZNF783Q6ZMS7 281 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 RFX8Q6ZV50 586 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 C22orf34Q6ZV56 151 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 B4GALNT4Q76KP1 1039 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 TRMT11Q7Z4G4 463 aaKnown RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 TFAP2DQ7Z6R9 452 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 SETD3Q86TU7 594 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-209ENST00000479532 GTF2IRD2Q86UP8 949 aa6.3□□□□□ -1.4
SF3B1-209ENST00000479532 VSIG1Q86XK7 387 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms