RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GP1BAP07359 652 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 HOXB3P14651 431 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 PEX5P50542 639 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 ADKP55263 362 aaKnown RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 CDH6P55285 790 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 MAXP61244 160 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 E2F1Q01094 437 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 TRAF2Q12933 501 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 DPYSL3Q14195 570 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 NFATC4Q14934 902 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 CDKN3Q16667 212 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 COL28A1Q2UY09 1125 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 PERM1Q5SV97 790 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 NCBP2-AS2Q69YL0 99 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 ERAP2Q6P179 960 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 CBARPQ8N350 705 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 TEX26Q8N6G2 289 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 ZNF564Q8TBZ8 553 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 IFI44Q8TCB0 444 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 NXPE2Q96DL1 559 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 CRELD1Q96HD1 420 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 NUDCD1Q96RS6 583 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 NRSN2Q9GZP1 204 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 SPASTQ9UBP0 616 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 B4GALT6Q9UBX8 382 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 SALL4Q9UJQ4 1053 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 MGAQ8IWI9 3026 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 EME2A4GXA9 379 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 CFAP69A5D8W1 941 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 MYO1FO00160 1098 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 LZTS3O60299 673 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 PCCBP05166 539 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 TGM2P21980 687 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 LHCGRP22888 699 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 HK3P52790 923 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 TCEA2Q15560 299 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 SLC18A3Q16572 532 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 CFAP58Q5T655 872 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 BTN2A2Q8WVV5 523 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 HNRNPLLQ8WVV9 542 aaKnown RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 COQ10AQ96MF6 247 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 SMIM14Q96QK8 99 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 USP29Q9HBJ7 922 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 RCOR3Q9P2K3 495 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 CACNA1GO43497 2377 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 A0A0U1RQS6 177 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 TMEM202A6NGA9 273 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 PROSCO94903 275 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 MAP3K6O95382 1288 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 RENBPP51606 427 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 PPARDQ03181 441 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 GALNT2Q10471 571 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 MTM1Q13496 603 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 PAFAH1B3Q15102 231 aaKnown RBP14.16□□□□□ -0.14
UPF3A-204ENST00000475218 C6orf132Q5T0Z8 1188 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 FAXCQ5TGI0 409 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 EFL1Q7Z2Z2 1120 aaKnown RBP14.16□□□□□ -0.14
UPF3A-204ENST00000475218 PQLC3Q8N755 202 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 LRRN4Q8WUT4 740 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 OR1E3Q8WZA6 343 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 PDXPQ96GD0 296 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 CHP1Q99653 195 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 LGR4Q9BXB1 951 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 SCUBE2Q9NQ36 999 aa14.16□□□□□ -0.14
UPF3A-204ENST00000475218 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.16□□□□□ -0.142e-6■■■■□ 22.9
UPF3A-204ENST00000475218 BRINP1O60477 761 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 SOCS5O75159 536 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 TRIM23P36406 574 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 ZNF235Q14590 738 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 CNGA3Q16281 694 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 HS1BP3Q53T59 392 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 SPECC1LQ69YQ0 1117 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 CRTC1Q6UUV9 634 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 HID1Q8IV36 788 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 SFTPA2Q8IWL1 248 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 ATPAF2Q8N5M1 289 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 MAML1Q92585 1016 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 FAF2Q96CS3 445 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 IL12RB2Q99665 862 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 SLC13A1Q9BZW2 595 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 FGF22Q9HCT0 170 aa14.15□□□□□ -0.14
UPF3A-204ENST00000475218 ATMQ13315 3056 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 CPED1A4D0V7 1026 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 NPIPB15A6NHN6 443 aaPredicted RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 TMEM110-MUSTN1A8MSY1 372 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 FZD6O60353 706 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 PDHA1P08559 390 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 ELFN1P0C7U0 828 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 GJC1P36383 396 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 HSPA9P38646 679 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 GARSP41250 739 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 MMP13P45452 471 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 SRP54P61011 504 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 SLC10A2Q12908 348 aaPredicted RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 KRT81Q14533 505 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 ANKRD20A8PQ5CZ79 823 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 ENPP7Q6UWV6 458 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 RFLNAQ6ZTI6 216 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 TSPAN33Q86UF1 283 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms