RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CCNHP51946 323 aaPredicted RBP8.08□□□□□ -1.12
USP54-211ENST00000474929 PDE1BQ01064 536 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 FOLH1Q04609 750 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 DNM1Q05193 864 aaKnown RBP8.08□□□□□ -1.12
USP54-211ENST00000474929 SLC20A2Q08357 652 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 DPYDQ12882 1025 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 KLHL40Q2TBA0 621 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 KCNMB4Q86W47 210 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 RASGRP3Q8IV61 690 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 C12orf56Q8IXR9 622 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 PLPP6Q8IY26 295 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 ZADH2Q8N4Q0 377 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 GOLGA5Q8TBA6 731 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 PARD3BQ8TEW8 1205 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 NUDT8Q8WV74 236 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 DNAJC19Q96DA6 116 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 ZDHHC6Q9H6R6 413 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 APMAPQ9HDC9 416 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 LHX9Q9NQ69 397 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 MBNL1Q9NR56 388 aaKnown RBP8.08□□□□□ -1.12
USP54-211ENST00000474929 DLL4Q9NR61 685 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 PANK4Q9NVE7 773 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 ARHGEF38Q9NXL2 777 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 SIDT1Q9NXL6 827 aaKnown RBP8.08□□□□□ -1.12
USP54-211ENST00000474929 VPS51Q9UID3 782 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 LNPEPQ9UIQ6 1025 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 EDARQ9UNE0 448 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 OR51B4Q9Y5P0 310 aa8.08□□□□□ -1.12
USP54-211ENST00000474929 FBN1P35555 2871 aaKnown RBP8.07□□□□□ -1.12
USP54-211ENST00000474929 LRRIQ3A6PVS8 624 aaPredicted RBP8.07□□□□□ -1.12
USP54-211ENST00000474929 AREL1O15033 823 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 TOX3O15405 576 aaPredicted RBP8.07□□□□□ -1.12
USP54-211ENST00000474929 KIAA0754O94854 1291 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 ECEL1O95672 775 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 RHOCP08134 193 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 HOXC4P09017 264 aaPredicted RBP8.07□□□□□ -1.12
USP54-211ENST00000474929 RRM1P23921 792 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 MPSTP25325 297 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 PTGIRP43119 386 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 FASLGP48023 281 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 GLRBP48167 497 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 SMSP52788 366 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 KRTAP10-9P60411 292 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 AGERQ15109 404 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.07□□□□□ -1.12
USP54-211ENST00000474929 CARD16Q5EG05 197 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 CRB2Q5IJ48 1285 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 SNAP47Q5SQN1 464 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 ZNF765Q7L2R6 523 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 BEND5Q7L4P6 421 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 FAM186BQ8IYM0 893 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 DQX1Q8TE96 717 aaKnown RBP8.07□□□□□ -1.12
USP54-211ENST00000474929 CT55Q8WUE5 264 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 SH3KBP1Q96B97 665 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 SGSM3Q96HU1 749 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 SLC38A3Q99624 504 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 BACH2Q9BYV9 841 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 LRRC27Q9C0I9 530 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 TMEM168Q9H0V1 697 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 TRNAU1APQ9NX07 287 aaKnown RBP8.07□□□□□ -1.12
USP54-211ENST00000474929 TMEM9Q9P0T7 183 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 TFIP11Q9UBB9 837 aaKnown RBP8.07□□□□□ -1.12
USP54-211ENST00000474929 ITM2BQ9Y287 266 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 TBC1D30Q9Y2I9 924 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 NEU2Q9Y3R4 380 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 FER1L5A0AVI2 2057 aa8.07□□□□□ -1.12
USP54-211ENST00000474929 ZNF469Q96JG9 3925 aaPredicted RBP8.07□□□□□ -1.12
USP54-211ENST00000474929 A0A1W2PQJ5 194 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 KIAA1324LA8MWY0 1029 aaPredicted RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 KCNU1A8MYU2 1149 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 PLEKP08567 350 aaPredicted RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 SERPINH1P50454 418 aaKnown RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 EPHA4P54764 986 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 CDH4P55283 916 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 GEMIN4P57678 1058 aaKnown RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 FOXD4Q12950 439 aaPredicted RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 INPP5AQ14642 412 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 GOLGA7BQ2TAP0 167 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 ZNF394Q53GI3 561 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 NKAIN2Q5VXU1 208 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 B3GNTL1Q67FW5 361 aaPredicted RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 Q6ZS92 163 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 SETD3Q86TU7 594 aaPredicted RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 CIR1Q86X95 450 aaPredicted RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 PPP1R3BQ86XI6 285 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 PLXDC1Q8IUK5 500 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 AVL9Q8NBF6 648 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 FAR1Q8WVX9 515 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 OR1E3Q8WZA6 343 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 TATDN2Q93075 761 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 ISG20Q96AZ6 181 aaKnown RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 FCRL4Q96PJ5 515 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 TNKS2Q9H2K2 1166 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 GSX1Q9H4S2 264 aaPredicted RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 FGF22Q9HCT0 170 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 TAAR2Q9P1P5 351 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 TSPAN16Q9UKR8 245 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 RPH3AQ9Y2J0 694 aaPredicted RBP8.06□□□□□ -1.12
USP54-211ENST00000474929 OR1A2Q9Y585 309 aa8.06□□□□□ -1.12
USP54-211ENST00000474929 PCDHGB6Q9Y5F9 930 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms