RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	YPEL5	P62699	121 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	PPARD	Q03181	441 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	TBX2	Q13207	712 aa	Predicted RBP	11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	PAFAH1B3	Q15102	231 aa	Known RBP	11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	TCEA2	Q15560	299 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	CCDC181	Q5TID7	509 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	ENPP7	Q6UWV6	458 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	USP45	Q70EL2	814 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	RAB44	Q7Z6P3	723 aa	Predicted RBP	11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	HID1	Q8IV36	788 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	CCDC170	Q8IYT3	715 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	SLC22A18AS	Q8N1D0	253 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	TC2N	Q8N9U0	490 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	PCDH19	Q8TAB3	1148 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	BAHD1	Q8TBE0	780 aa	Predicted RBP	11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	TSC1	Q92574	1164 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	GLMN	Q92990	594 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	RNF25	Q96BH1	459 aa	Predicted RBP	11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	IFT43	Q96FT9	208 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	SEMA3C	Q99985	751 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	MGME1	Q9BQP7	344 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	DUSP23	Q9BVJ7	150 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	RBM22	Q9NW64	420 aa	Known RBP eCLIP	11.59	□□□□□ -0.55	1e-18	■■□□□ 14.2
CPNE1-222	ENST00000473373	SPAST	Q9UBP0	616 aa		11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	DSP	P15924	2871 aa	Known RBP	11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	ZFC3H1	O60293	1989 aa	Known RBP	11.59	□□□□□ -0.55
CPNE1-222	ENST00000473373	PKD1L2	Q7Z442	2459 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	TSPAN11	A1L157	253 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	C10orf142	B7Z368	130 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	CACNB4	O00305	520 aa	Predicted RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	TOR1B	O14657	336 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	PPP1R12A	O14974	1030 aa	Predicted RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	SPINT1	O43278	529 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	AQP9	O43315	295 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	SIGLEC6	O43699	453 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	PTMA	P06454	111 aa	Known RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	ANXA6	P08133	673 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	CDK4	P11802	303 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	CCNB1	P14635	433 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	CKMT2	P17540	419 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	CCNC	P24863	283 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	TNNT3	P45378	269 aa	Predicted RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	DUSP3	P51452	185 aa	Predicted RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	GALNT2	Q10471	571 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	FZD2	Q14332	565 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	PRRT3	Q5FWE3	981 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	RALGPS1	Q5JS13	557 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	KAZN	Q674X7	775 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	KDM7A	Q6ZMT4	941 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	DAAM2	Q86T65	1068 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	KIAA1328	Q86T90	577 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	CCDC13	Q8IYE1	715 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	PHACTR4	Q8IZ21	702 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	TP53I13	Q8NBR0	393 aa	Predicted RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	LRRN4	Q8WUT4	740 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	RAPGEF5	Q92565	580 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	CENPT	Q96BT3	561 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	NUS1	Q96E22	293 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	MRFAP1L1	Q96HT8	127 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	RNF157	Q96PX1	679 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	KLF6	Q99612	283 aa	Predicted RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	ABCG4	Q9H172	646 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	SYNDIG1	Q9H7V2	258 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	NOD2	Q9HC29	1040 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	MBNL1	Q9NR56	388 aa	Known RBP	11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	UCKL1	Q9NWZ5	548 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	KL	Q9UEF7	1012 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	PHTF1	Q9UMS5	762 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	OR1A2	Q9Y585	309 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	PCDHA13	Q9Y5I0	950 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	WDFY3	Q8IZQ1	3526 aa		11.58	□□□□□ -0.56
CPNE1-222	ENST00000473373	FAM149A	A5PLN7	773 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	MATN3	O15232	486 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	RECQL5	O94762	991 aa	Predicted RBP	11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	CSF2	P04141	144 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	NME1	P15531	152 aa	Known RBP	11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	CTPS1	P17812	591 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	COMT	P21964	271 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	KEL	P23276	732 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	IL4R	P24394	825 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	VIPR1	P32241	457 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	ARSE	P51690	589 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	PFN3	P60673	137 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	DSC2	Q02487	901 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	GBE1	Q04446	702 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	ZNF211	Q13398	564 aa	Predicted RBP	11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	C1orf61	Q13536	156 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	INPP5A	Q14642	412 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	DEFB133	Q30KQ1	61 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	LIPI	Q6XZB0	460 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	MACC1	Q6ZN28	852 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	DPPA4	Q7L190	304 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	BZW1	Q7L1Q6	419 aa	Known RBP	11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	ZSWIM9	Q86XI8	627 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	PROSER1	Q86XN7	944 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	TMTC1	Q8IUR5	882 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	RBFA	Q8N0V3	343 aa		11.57	□□□□□ -0.56
CPNE1-222	ENST00000473373	PGBD5	Q8N414	524 aa		11.57	□□□□□ -0.56

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