RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 C15orf41Q9Y2V0 281 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 NUMA1Q14980 2115 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 CD3EAPO15446 510 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 ACSL4O60488 711 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 LRG1P02750 347 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 RHOQP17081 205 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 ATF6P18850 670 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 MCCD1P59942 119 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 STX1BP61266 288 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 DDX39BQ13838 428 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 DSC3Q14574 896 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 FSCBQ5H9T9 825 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 ATG14Q6ZNE5 492 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 DNAJB7Q7Z6W7 309 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 LMNTD2Q8IXW0 634 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 KCNN1Q92952 543 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 ZNHIT2Q9UHR6 403 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 RTN3O95197 1032 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 SLC35E2BP0CK96 405 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 TYMPP19971 482 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 GRK2P25098 689 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 CNTFP26441 200 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 PBLDP30039 288 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 MRNIPQ6NTE8 343 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 IZUMO2Q6UXV1 221 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 TMEM135Q86UB9 458 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 TXNDC5Q8NBS9 432 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 GPR21Q99679 349 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 GORASP1Q9BQQ3 440 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 MRPL46Q9H2W6 279 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 DLGAP2Q9P1A6 1054 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 SIRPGQ9P1W8 387 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 CFAP97Q9P2B7 532 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 PARP14Q460N5 1801 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 ARHGAP10A1A4S6 786 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 MAGEB16A2A368 324 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 PABPN1LA6NDY0 278 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 H7C4K7 107 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 SMIM24O75264 130 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 STK19P49842 368 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 DLG1Q12959 904 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 TSTD2Q5T7W7 516 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 ARHGAP18Q8N392 663 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 SPPL2BQ8TCT7 592 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 IRGQQ8WZA9 623 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 FCRL5Q96RD9 977 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 HAPLN3Q96S86 360 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 SLC25A51Q9H1U9 297 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 RAI2Q9Y5P3 530 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 ANK1P16157 1881 aa13.79□□□□□ -0.2
CCDC88A-211ENST00000471947 TNFRSF10BO14763 440 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 TBX10O75333 385 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 STAMBPO95630 424 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 XPAP23025 273 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 AKT1P31749 480 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 MC4RP32245 332 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 SCNN1AP37088 669 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 TSNQ15631 228 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 C6orf10Q5SRN2 563 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 TMPRSS6Q8IU80 811 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 ACOX2Q99424 681 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 OSBPL2Q9H1P3 480 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 NOL6Q9H6R4 1146 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 CATSPERZQ9NTU4 200 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 SLC7A8Q9UHI5 535 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 PLXNB2O15031 1838 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 KRT87PA6NCN2 255 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 NPEPPSL1A6NEC2 478 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 SCAMP1O15126 338 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 TRIM24O15164 1050 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 RFPL2O75678 378 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 CCDC153Q494R4 210 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 PAQR3Q6TCH7 311 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 CMTM8Q8IZV2 173 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 TTC30BQ8N4P2 665 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 SIDT2Q8NBJ9 832 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 CDH19Q9H159 772 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 CSNK1G1Q9HCP0 422 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 BRWD1Q9NSI6 2320 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 UNCXA6NJT0 531 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 C2orf81A6NN90 581 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 KLKB1P03952 638 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 MPOP05164 745 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 COX4I1P13073 169 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 CDKN2DP55273 166 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 HNRNPDQ14103 355 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 TRIP4Q15650 581 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 SMYD5Q6GMV2 418 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 DDX53Q86TM3 631 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 PGBD5Q8N414 524 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 CDYL2Q8N8U2 506 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 SORCS1Q8WY21 1168 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 MRPS31Q92665 395 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 PIDD1Q9HB75 910 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 PNPLA8Q9NP80 782 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 SCML2Q9UQR0 700 aa13.78□□□□□ -0.2
CCDC88A-211ENST00000471947 C1orf232A0A0U1RR37 186 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 SEC24DO94855 1032 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 PSMG1O95456 288 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 CCL5P13501 91 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms