RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 OR1A2Q9Y585 309 aa17.6■□□□□ 0.41
COL7A1-208ENST00000470076 A0A1W2PNU3 283 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-208ENST00000470076 DFFAO00273 331 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 FTLP02792 175 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-208ENST00000470076 PCCBP05166 539 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 MIPP30301 263 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 PRKCIP41743 596 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 MLLT3P42568 568 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-208ENST00000470076 C19orf57Q0VDD7 668 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 FILIP1LQ4L180 1135 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 RD3Q7Z3Z2 195 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 LZTR1Q8N653 840 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 PAF1Q8N7H5 531 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 WDR36Q8NI36 951 aaKnown RBP17.59■□□□□ 0.41
COL7A1-208ENST00000470076 AIPL1Q9NZN9 384 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 CNOT8Q9UFF9 292 aaKnown RBP17.59■□□□□ 0.41
COL7A1-208ENST00000470076 SCINQ9Y6U3 715 aa17.59■□□□□ 0.41
COL7A1-208ENST00000470076 SMTNL1A8MU46 457 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 NTN3O00634 580 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-208ENST00000470076 KLK10O43240 276 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 LRCH4O75427 683 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 RECQL5O94762 991 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-208ENST00000470076 TNFP01375 233 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 PRKCGP05129 697 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 RENBPP51606 427 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 AP1S1P61966 158 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 RALGDSQ12967 914 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 ANO6Q4KMQ2 910 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 CYP4V2Q6ZWL3 525 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-208ENST00000470076 ZNF571Q7Z3V5 609 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-208ENST00000470076 ARL14Q8N4G2 192 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 NPWQ8N729 165 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 KYQ8NBH2 561 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 OR6C4Q8NGE1 309 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 TRIM11Q96F44 468 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 CCDC97Q96F63 343 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-208ENST00000470076 PRR11Q96HE9 360 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-208ENST00000470076 PSKH2Q96QS6 385 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 RBM15Q96T37 977 aaKnown RBP eCLIP17.58■□□□□ 0.4
COL7A1-208ENST00000470076 TRIM7Q9C029 511 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 SYNDIG1Q9H7V2 258 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 MRPL47Q9HD33 250 aaKnown RBP17.58■□□□□ 0.4
COL7A1-208ENST00000470076 SIRPGQ9P1W8 387 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 SEPT3Q9UH03 358 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 GPR34Q9UPC5 381 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 DGKBQ9Y6T7 804 aa17.58■□□□□ 0.4
COL7A1-208ENST00000470076 CCDC187A0A096LP49 1063 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 A0A1W2PQC6 194 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 CACNB4O00305 520 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-208ENST00000470076 PRB1P04280 392 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 ELFN1P0C7U0 828 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 KELP23276 732 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 SCNN1BP51168 640 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 PDX1P52945 283 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 KIAA1024LP59773 190 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 SKOR1P84550 965 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 DPYSQ14117 519 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 TMCO4Q5TGY1 634 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 LIPIQ6XZB0 460 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 ARHGAP36Q6ZRI8 547 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 DPPA4Q7L190 304 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 PLA2G15Q8NCC3 412 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 SPOCK2Q92563 424 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 ZNF653Q96CK0 615 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 ZNF599Q96NL3 588 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 ZWILCHQ9H900 591 aa17.57■□□□□ 0.4
COL7A1-208ENST00000470076 CWC15Q9P013 229 aaKnown RBP17.57■□□□□ 0.4
COL7A1-208ENST00000470076 UNC13CQ8NB66 2214 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 CDRT15L2A8MXV6 281 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 TMX2-CTNND1H3BSU7 103 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 ERVH48-1M5A8F1 160 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 DDX3XO00571 662 aaKnown RBP eCLIP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 TRAFD1O14545 582 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 HOXC4P09017 264 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 MYBL1P10243 752 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 PCK1P35558 622 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 RHDQ02161 417 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 KLHL30Q0D2K2 578 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 LBRQ14739 615 aaKnown RBP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 TCEA2Q15560 299 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 E4F1Q66K89 784 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 FOXR1Q6PIV2 292 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 OR56A4Q8NGH8 313 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 FUBP1Q96AE4 644 aaKnown RBP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 CCDC74AQ96AQ1 378 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 PDXPQ96GD0 296 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 LIN37Q96GY3 246 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 GFM1Q96RP9 751 aaKnown RBP17.56■□□□□ 0.4
COL7A1-208ENST00000470076 CPNE5Q9HCH3 593 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 SSUH2Q9Y2M2 353 aa17.56■□□□□ 0.4
COL7A1-208ENST00000470076 A0A1W2PQ67 120 aa17.55■□□□□ 0.4
COL7A1-208ENST00000470076 TMEM202A6NGA9 273 aa17.55■□□□□ 0.4
COL7A1-208ENST00000470076 H3BRJ5 948 aa17.55■□□□□ 0.4
COL7A1-208ENST00000470076 TNFRSF10CO14798 259 aa17.55■□□□□ 0.4
COL7A1-208ENST00000470076 CASC3O15234 703 aaKnown RBP17.55■□□□□ 0.4
COL7A1-208ENST00000470076 C1QL1O75973 258 aa17.55■□□□□ 0.4
COL7A1-208ENST00000470076 TNFSF15O95150 251 aa17.55■□□□□ 0.4
COL7A1-208ENST00000470076 ITGA2BP08514 1039 aa17.55■□□□□ 0.4
COL7A1-208ENST00000470076 TRIM23P36406 574 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms