RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TBC1D3IA0A087WXS9 549 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3EA0A087X179 549 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3KA0A087X1G2 549 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3FA6NER0 549 aaPredicted RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ZSCAN5CA6NGD5 496 aaPredicted RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ARHGAP42A6NI28 874 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 C3orf70A6NLC5 250 aaPredicted RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 CDRT15L2A8MXV6 281 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3LB9A6J9 549 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 C1QTNF3-AMACRE9PGA6 284 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 LZTS3O60299 673 aaPredicted RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 MAGEC1O60732 1142 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 SDC3O75056 442 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 MT-CO1P00395 513 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 GP1BAP07359 652 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3HP0C7X1 549 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 CKMT1AP12532 417 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 CTNNA2P26232 953 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 CTNNA1P35221 906 aaKnown RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 SERPINB6P35237 376 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 NUDT1P36639 197 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 MARCKSL1P49006 195 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ADPRHP54922 357 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 GEMIN4P57678 1058 aaKnown RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 CCDC15Q0P6D6 951 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 CLN3Q13286 438 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ISXQ2M1V0 245 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ODF2Q5BJF6 829 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 NCBP2-AS2Q69YL0 99 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3GQ6DHY5 549 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3CQ6IPX1 549 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 LINGO4Q6UY18 593 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 Q6ZVU0 165 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 NT5DC3Q86UY8 548 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ZNF354CQ86Y25 554 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 KATNAL2Q8IYT4 538 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3Q8IZP1 549 aaPredicted RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ATP11CQ8NB49 1132 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 OR4C6Q8NH72 309 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 PCDH19Q8TAB3 1148 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 EXTL1Q92935 676 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 GRAMD1AQ96CP6 724 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 SLC39A8Q9C0K1 460 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ABCG4Q9H172 646 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 ETNK2Q9NVF9 386 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 SARDHQ9UL12 918 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 MFHAS1Q9Y4C4 1052 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 PCDHGA8Q9Y5G5 932 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TLN1Q9Y490 2541 aaKnown RBP12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 NOTCH2Q04721 2471 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 A0A1W2PNU3 283 aaPredicted RBP12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 CCDC66A2RUB6 948 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 LATO43561 262 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 CD160O95971 181 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 CCR10P46092 362 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 SERPINH1P50454 418 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 PAPOLAP51003 745 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 PAFAH1B3Q15102 231 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 USP53Q70EK8 1073 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 PEX26Q7Z412 305 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 PRPF39Q86UA1 669 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 IQCHQ86VS3 1027 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 PQLC3Q8N755 202 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 TMIEQ8NEW7 156 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 OR2A12Q8NGT7 310 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 KRT35Q92764 455 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 RNF25Q96BH1 459 aaPredicted RBP12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 SGF29Q96ES7 293 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 PRR11Q96HE9 360 aaPredicted RBP12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 RNF157Q96PX1 679 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 PDFQ9HBH1 243 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 LZTFL1Q9NQ48 299 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 AMFRQ9UKV5 643 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 DMTF1Q9Y222 760 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 PCDHA3Q9Y5H8 950 aa12.04□□□□□ -0.48
SQSTM1-206ENST00000466342 MIF4GDA9UHW6 222 aaKnown RBP12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 K7ERQ8 282 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 DFFAO00273 331 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 PLRG1O43660 514 aaKnown RBP12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 MFSD11O43934 449 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 BNIP3LO60238 219 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 ZRANB2O95218 330 aaKnown RBP eCLIP12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 FTCDO95954 541 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 PRNPP04156 253 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 CHRNA3P32297 505 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 CDKN2BP42772 138 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 RECQLP46063 649 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 DUSP3P51452 185 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 METAP1P53582 386 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 CNTN1Q12860 1018 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 OVGP1Q12889 678 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 TAZQ16635 292 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 SLC9A4Q6AI14 798 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 NAPEPLDQ6IQ20 393 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 NEK5Q6P3R8 708 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 C22orf39Q6P5X5 142 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 MFSD7Q6UXD7 560 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 SPOCD1Q6ZMY3 1216 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 CLEC14AQ86T13 490 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms