RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 POMPQ9Y244 141 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 TRAF6Q9Y4K3 522 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 SBF2Q86WG5 1849 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 KCNU1A8MYU2 1149 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 TMEM233B4DJY2 109 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 TRAFD1O14545 582 aaPredicted RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 SYNCRIPO60506 623 aaKnown RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 CLASP2O75122 1294 aaKnown RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 ZNF23P17027 643 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 GRIA3P42263 894 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 ETV4P43268 484 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 CXCR3P49682 368 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 PLD1Q13393 1074 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 DDX39BQ13838 428 aaKnown RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 FRG1Q14331 258 aaKnown RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 LRRC49Q8IUZ0 686 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 RTL3Q8N8U3 475 aaKnown RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 SNX19Q92543 992 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 TMEM79Q9BSE2 394 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 GTF2IRD1Q9UHL9 959 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 ZNF839A8K0R7 811 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 CD3EAPO15446 510 aaKnown RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 IPO13O94829 963 aaKnown RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 CYBBP04839 570 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 FGF3P11487 239 aaPredicted RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 PEX2P28328 305 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 PSEN1P49768 467 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 ACTR3P61158 418 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 SLC10A7Q0GE19 358 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 RALGDSQ12967 914 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 LRRC23Q53EV4 343 aaPredicted RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 PPM1LQ5SGD2 360 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 TTC33Q6PID6 262 aaPredicted RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 MAMDC4Q6UXC1 1216 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 FRMD7Q6ZUT3 714 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 NPWQ8N729 165 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 DCUN1D1Q96GG9 259 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 HIC2Q96JB3 615 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 RTKNQ9BST9 563 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 HGH1Q9BTY7 390 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 ZMYM5Q9UJ78 669 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 PPM1HQ9ULR3 514 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 CORO1CQ9ULV4 474 aaPredicted RBP11.69□□□□□ -0.54
NPHP4-204ENST00000460696 SLC8A2Q9UPR5 921 aa11.69□□□□□ -0.54
NPHP4-204ENST00000460696 A0A1W2PQ45 241 aaPredicted RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 A0A1W2PQY0 241 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 UNCXA6NJT0 531 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 SMNDC1O75940 238 aaKnown RBP eCLIP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 SPATA31D3P0C874 917 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 HGFP14210 728 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 NNMTP40261 264 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 KPNA1P52294 538 aaPredicted RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 METTL21CQ5VZV1 264 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 FAM45BPQ6NSW5 357 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 SPATA31D4Q6ZUB0 917 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 SLC24A5Q71RS6 500 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 RPS27LQ71UM5 84 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 ZC3HC1Q86WB0 502 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 MIER2Q8N344 545 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 OR7D4Q8NG98 312 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 DNAJB14Q8TBM8 379 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 STAG3L4Q8TBR4 150 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 FAM45AQ8TCE6 357 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 BADQ92934 168 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 BTN2A3PQ96KV6 586 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 SH3GL3Q99963 347 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 SLC25A51Q9H1U9 297 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 EGFL7Q9UHF1 273 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 GNRH1P01148 92 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 CLTBP09497 229 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 LINC00032P0C843 101 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 GSCP56915 257 aaPredicted RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 PHEXP78562 749 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 DYNC1I2Q13409 638 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 VARS2Q5ST30 1063 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 OTUD3Q5T2D3 398 aaPredicted RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 THEMIS2Q5TEJ8 643 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 ZFP1Q6P2D0 407 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 PQLC1Q8N2U9 271 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 ELMOD1Q8N336 334 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 DNAJC1Q96KC8 554 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 VPS45Q9NRW7 570 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 MTMR10Q9NXD2 777 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 AP4S1Q9Y587 144 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 GVINP1Q7Z2Y8 2422 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 CCNT2O60583 730 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 NELFEP18615 380 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 OR1D2P34982 312 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 SLC7A2P52569 658 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 GALNT2Q10471 571 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 HNRNPDQ14103 355 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 ARHGEF7Q14155 803 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 PDK3Q15120 406 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 ATP6AP1LQ52LC2 224 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 AARS2Q5JTZ9 985 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 SAMD4BQ5PRF9 694 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 AAGABQ6PD74 315 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 AGMOQ6ZNB7 445 aa11.68□□□□□ -0.54
NPHP4-204ENST00000460696 EFL1Q7Z2Z2 1120 aaKnown RBP11.68□□□□□ -0.54
NPHP4-204ENST00000460696 OR4K2Q8NGD2 314 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms