RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 MTSS1LQ765P7 747 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ADAMTSL2Q86TH1 951 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TRABD2AQ86V40 505 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TNS4Q8IZW8 715 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TEX9Q8N6V9 391 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 FLCNQ8NFG4 579 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 LINGO1Q96FE5 620 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 DPY30Q9C005 99 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ABCG8Q9H221 673 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CAPN10Q9HC96 672 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 MIEF1Q9NQG6 463 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 SAGE1Q9NXZ1 904 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 XPR1Q9UBH6 696 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 DDX60LQ5H9U9 1706 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TTC36A6NLP5 189 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ZBTB42B2RXF5 422 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 HAS3O00219 553 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 UBOX5O94941 541 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TIMP1P01033 207 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 PABPC1P11940 636 aaKnown RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 RPL14P50914 215 aaKnown RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 FBXW4P57775 412 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 IRF8Q02556 426 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CNTN1Q12860 1018 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ABRQ12979 859 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 MAD2L1Q13257 205 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 DLG2Q15700 870 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CEP70Q8NHQ1 597 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TDP1Q9NUW8 608 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SHANK3Q9BYB0 1731 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 FAM155BO75949 473 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 METTL18O95568 372 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SPAM1P38567 509 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TEAD2Q15562 447 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CYP2A13Q16696 494 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 IL27RAQ6UWB1 636 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TRPC4APQ8TEL6 797 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ATL1Q8WXF7 558 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ACDQ96AP0 544 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TIFAQ96CG3 184 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 REPS1Q96D71 796 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 RXFP1Q9HBX9 757 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ARAP2Q8WZ64 1704 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 LAMB2P55268 1798 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ILVBLA1L0T0 632 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CCL22O00626 93 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 FCHO1O14526 889 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SH3BGRLO75368 114 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 EDN1P05305 212 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SEC13P55735 322 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ATP6V0D1P61421 351 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 RFTN1Q14699 578 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 LRRC36Q1X8D7 754 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SNX30Q5VWJ9 437 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ESRP1Q6NXG1 681 aaKnown RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CRTC3Q6UUV7 619 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 WDTC1Q8N5D0 677 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TRIML2Q8N7C3 387 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CATSPER1Q8NEC5 780 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TRPV1Q8NER1 839 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 OXNAD1Q96HP4 312 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 PIWIL1Q96J94 861 aaKnown RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CYP2S1Q96SQ9 504 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SIKE1Q9BRV8 207 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 PHACTR1Q9C0D0 580 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ANLNQ9NQW6 1124 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SH3BP4Q9P0V3 963 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 KLQ9UEF7 1012 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TMCO1Q9UM00 188 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 MYO1GB0I1T2 1018 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CACNB4O00305 520 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ADAMTS4O75173 837 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 C2P06681 752 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 PKMP14618 531 aaKnown RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CHI3L1P36222 383 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 GRIA4P48058 902 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 ALDH9A1P49189 494 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CBX2Q14781 532 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 TMCO2Q7Z6W1 182 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 LDB1Q86U70 411 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 COLGALT2Q8IYK4 626 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 KLHL32Q96NJ5 620 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 VPS51Q9UID3 782 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 NDRG2Q9UN36 371 aaKnown RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 NMBRP28336 390 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SERPINB3P29508 390 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SEMA5AQ13591 1074 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 PAGE2BQ5JRK9 111 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CLLU1OSQ5K130 101 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 RTP2Q5QGT7 225 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 BNC2Q6ZN30 1099 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 SLC44A2Q8IWA5 706 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CELF5Q8N6W0 485 aaKnown RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 OR14C36Q8NHC7 312 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 PIWIL2Q8TC59 973 aaKnown RBP7.43□□□□□ -1.22
SYNE1-213ENST00000448038 MIPOL1Q8TD10 442 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 HEXDCQ8WVB3 486 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 KBTBD7Q8WVZ9 684 aa7.43□□□□□ -1.22
SYNE1-213ENST00000448038 CENPTQ96BT3 561 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms