RNA–Protein interactions for RNA: ENST00000435455.5

SMPD4-207, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 842 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-207ENST00000435455 CCDC50Q8IVM0 306 aa16.34■□□□□ 0.21
SMPD4-207ENST00000435455 TP53I13Q8NBR0 393 aaPredicted RBP16.34■□□□□ 0.21
SMPD4-207ENST00000435455 OLFM3Q96PB7 478 aa16.34■□□□□ 0.21
SMPD4-207ENST00000435455 IL12RB2Q99665 862 aa16.34■□□□□ 0.21
SMPD4-207ENST00000435455 APOBEC2Q9Y235 224 aaKnown RBP16.34■□□□□ 0.21
SMPD4-207ENST00000435455 COQ6Q9Y2Z9 468 aa16.34■□□□□ 0.21
SMPD4-207ENST00000435455 PCDHA3Q9Y5H8 950 aa16.34■□□□□ 0.21
SMPD4-207ENST00000435455 RAI2Q9Y5P3 530 aa16.34■□□□□ 0.21
SMPD4-207ENST00000435455 ARID1BQ8NFD5 2236 aaPredicted RBP16.34■□□□□ 0.21
SMPD4-207ENST00000435455 hCG_1818297A0A087WSY0 165 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 KCNK1O00180 336 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 CST8O60676 142 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 PGLSO95336 258 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 TRIM16O95361 564 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 HLA-DQB2P05538 268 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 PMLP29590 882 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 VIPR1P32241 457 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 MARCKSL1P49006 195 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 THOP1P52888 689 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 DSC2Q02487 901 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 RALGDSQ12967 914 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 BNIP3Q12983 259 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 PTK2BQ14289 1009 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 PPP2R5EQ16537 467 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 USP45Q70EL2 814 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 NDUFAF2Q8N183 169 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 SLC22A18ASQ8N1D0 253 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 LRRC57Q8N9N7 239 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 LRRN4Q8WUT4 740 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 KRT35Q92764 455 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 DESI2Q9BSY9 194 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 KCTD5Q9NXV2 234 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 B4GALT6Q9UBX8 382 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 PPIL1Q9Y3C6 166 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 CHD8Q9HCK8 2581 aa16.33■□□□□ 0.2
SMPD4-207ENST00000435455 TPRP12270 2363 aaKnown RBP16.32■□□□□ 0.2
SMPD4-207ENST00000435455 CETN2P41208 172 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 RPL26P61254 145 aaKnown RBP16.32■□□□□ 0.2
SMPD4-207ENST00000435455 HNRNPKP61978 463 aaKnown RBP eCLIP16.32■□□□□ 0.2
SMPD4-207ENST00000435455 SEMG2Q02383 582 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 PDE1CQ14123 709 aaPredicted RBP16.32■□□□□ 0.2
SMPD4-207ENST00000435455 FZD2Q14332 565 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 IRF4Q15306 451 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 WSCD2Q2TBF2 565 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 KANSL1Q7Z3B3 1105 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 PARGQ86W56 976 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 SYCE1Q8N0S2 351 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 ARRDC2Q8TBH0 407 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 P3H4Q92791 437 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 SCRN2Q96FV2 425 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 MCCC1Q96RQ3 725 aaPredicted RBP16.32■□□□□ 0.2
SMPD4-207ENST00000435455 MBNL1Q9NR56 388 aaKnown RBP16.32■□□□□ 0.2
SMPD4-207ENST00000435455 DNAJC28Q9NX36 388 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 FTSJ1Q9UET6 329 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 ANGPTL2Q9UKU9 493 aa16.32■□□□□ 0.2
SMPD4-207ENST00000435455 RPL26L1Q9UNX3 145 aaKnown RBP16.32■□□□□ 0.2
SMPD4-207ENST00000435455 GOLGA4Q13439 2230 aaKnown RBP16.31■□□□□ 0.2
SMPD4-207ENST00000435455 GRID2IPA4D2P6 1211 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 H3BM21 787 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 MTSS1O43312 755 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 TNFSF14O43557 240 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 FZD6O60353 706 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 RECQL5O94762 991 aaPredicted RBP16.31■□□□□ 0.2
SMPD4-207ENST00000435455 FTH1P19P0C7X4 201 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 DGKAP23743 735 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 CTNNA2P26232 953 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 PEX5P50542 639 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 EPHB1P54762 984 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 RWDD2BP57060 319 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 SHC2P98077 582 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 NIPAL4Q0D2K0 466 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 ZBTB17Q13105 803 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 MTM1Q13496 603 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 BBS12Q6ZW61 710 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.31■□□□□ 0.2
SMPD4-207ENST00000435455 CCDC112Q8NEF3 446 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 TFB1MQ8WVM0 346 aaKnown RBP16.31■□□□□ 0.2
SMPD4-207ENST00000435455 PIH1D2Q8WWB5 315 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 SEPT10Q9P0V9 454 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 AMFRQ9UKV5 643 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 DNPEPQ9ULA0 475 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 EFR3BQ9Y2G0 817 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 ACACBO00763 2458 aa16.31■□□□□ 0.2
SMPD4-207ENST00000435455 MACROD2A1Z1Q3 448 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 A8MX80 341 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 MIF4GDA9UHW6 222 aaKnown RBP16.3■□□□□ 0.2
SMPD4-207ENST00000435455 HACD1B0YJ81 288 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 PSMD11O00231 422 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 ARHGAP6O43182 974 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 SDC3O75056 442 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 PIAS2O75928 621 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 HEXIM1O94992 359 aaKnown RBP16.3■□□□□ 0.2
SMPD4-207ENST00000435455 CSF2P04141 144 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 PDHA1P08559 390 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 NME1P15531 152 aaKnown RBP16.3■□□□□ 0.2
SMPD4-207ENST00000435455 PECAM1P16284 738 aaPredicted RBP16.3■□□□□ 0.2
SMPD4-207ENST00000435455 PTPN7P35236 360 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 FOXC1Q12948 553 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 ARHGEF7Q14155 803 aa16.3■□□□□ 0.2
SMPD4-207ENST00000435455 INPP5AQ14642 412 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms