RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 AAGABQ6PD74 315 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ZYG11AQ6WRX3 759 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 TMEM26Q6ZUK4 368 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 RETREG3Q86VR2 466 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 PPHLN1Q8NEY8 458 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 NPLOC4Q8TAT6 608 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 HMGCLL1Q8TB92 370 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 DQX1Q8TE96 717 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 CASP10Q92851 521 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 PPM1MQ96MI6 270 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 MUC3BQ9H195 1237 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 WDR6Q9NNW5 1121 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 OAZ3Q9UMX2 235 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 RPL26L1Q9UNX3 145 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 ARID2Q68CP9 1835 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ZNF646O15015 1829 aaPredicted RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 HEATR9A2RTY3 570 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 KRT87PA6NCN2 255 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 PTGES3LE9PB15 166 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 PTGESO14684 152 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 TRMUO75648 421 aaKnown RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 MMP3P08254 477 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ARNTP27540 789 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 CD151P48509 253 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 DAOAP59103 153 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 MADCAM1Q13477 382 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 PSMD5Q16401 504 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 TIGD5Q53EQ6 642 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 C6orf10Q5SRN2 563 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 OGFRL1Q5TC84 451 aaPredicted RBP8.69□□□□□ -1.02
USP40-203ENST00000427112 LRRTM3Q86VH5 581 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ABI1Q8IZP0 508 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 BPIFB6Q8NFQ5 453 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 DRC3Q9H069 523 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ZBTB26Q9HCK0 441 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 ZMYM5Q9UJ78 669 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 LTBP3Q9NS15 1303 aa8.69□□□□□ -1.02
USP40-203ENST00000427112 CCL15-CCL14A0A0B4J2E2 113 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 NT5C1B-RDH14C9J2C7 533 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 DPYSL4O14531 572 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 PIP5K1BO14986 540 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 SRP72O76094 671 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 PABPC4LP0CB38 370 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 CDK4P11802 303 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 HGFP14210 728 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 TSHRP16473 764 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 CD247P20963 164 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 SNX16P57768 344 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 STX1BP61266 288 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 GNA12Q03113 381 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 CD300CQ08708 224 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 DPYSQ14117 519 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 TBCCQ15814 346 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 CCL15Q16663 113 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 STEAP4Q687X5 459 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 CHSY3Q70JA7 882 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 ERO1BQ86YB8 467 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 GPRC5AQ8NFJ5 357 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 ELMO1Q92556 727 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 PSMG2Q969U7 264 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 TEX37Q96LM6 180 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 TEKT5Q96M29 485 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 RNF145Q96MT1 663 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 FAM192AQ9GZU8 254 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 GBA3Q9H227 469 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 C1orf21Q9H246 121 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 RHOJQ9H4E5 214 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 AFF4Q9UHB7 1163 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 PCDHGA7Q9Y5G6 932 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 EI24O14681 340 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 FFAR3O14843 346 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 GPR42O15529 346 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 TNFAIP8O95379 198 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 PRKACGP22612 351 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 ELK4P28324 431 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 HADHAP40939 763 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 NAA20P61599 178 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 IKBKEQ14164 716 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 POLD3Q15054 466 aaPredicted RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 MAP3K21Q5TCX8 1036 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 RAP1GAP2Q684P5 730 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 NAPEPLDQ6IQ20 393 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 HMBOX1Q6NT76 420 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 TIFABQ6ZNK6 161 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 PDZD4Q76G19 769 aaPredicted RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 TMEM135Q86UB9 458 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 DHFR2Q86XF0 187 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 SMG8Q8ND04 991 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 RP9Q8TA86 221 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 SPPL2BQ8TCT7 592 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 JADE3Q92613 823 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 RMDN1Q96DB5 314 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 RMND5BQ96G75 393 aaPredicted RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 MTG1Q9BT17 334 aaPredicted RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 FRMD8Q9BZ67 464 aaPredicted RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 POLR1BQ9H9Y6 1135 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 CACNA2D2Q9NY47 1150 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 SCHIP1Q9P0W5 487 aaPredicted RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 IPO11Q9UI26 975 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 TRAF6Q9Y4K3 522 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms