RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 USP39Q53GS9 565 aaKnown RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 KIAA1211LQ6NV74 962 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 KLHDC8BQ8IXV7 354 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 LRRN4CLQ8ND94 238 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 FBXO25Q8TCJ0 367 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 SPOCK2Q92563 424 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 ECHDC3Q96DC8 303 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 MRGPRX1Q96LB2 322 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TTC1Q99614 292 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 BTBD1Q9H0C5 482 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 KDM4CQ9H3R0 1056 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 ZFYVE1Q9HBF4 777 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 SGK2Q9HBY8 427 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 HCN2Q9UL51 889 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3DA0A087WVF3 549 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3IA0A087WXS9 549 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3EA0A087X179 549 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3KA0A087X1G2 549 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TSPAN11A1L157 253 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3FA6NER0 549 aaPredicted RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 CAPN8A6NHC0 703 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 SHISA7A6NL88 538 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3LB9A6J9 549 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 H0Y858 1186 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 MAP3K13O43283 966 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 LZTS3O60299 673 aaPredicted RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 FZD6O60353 706 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 SPAG6O75602 509 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 GJB3O75712 270 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 SLC4A1P02730 911 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 PDHA1P08559 390 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3HP0C7X1 549 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 CTPS1P17812 591 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 NDUFV2P19404 249 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 LPOP22079 712 aaPredicted RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 ABL2P42684 1182 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 CARSP49589 748 aaKnown RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 COPAP53621 1224 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 CNTN1Q12860 1018 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 SGCGQ13326 291 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TAF1AQ15573 450 aaPredicted RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 ELF2Q15723 593 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 QPCTQ16769 361 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 ANKRD22Q5VYY1 191 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 DENND2CQ68D51 928 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3GQ6DHY5 549 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3CQ6IPX1 549 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TMEM92Q6UXU6 159 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 MAMSTRQ6ZN01 415 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 PARS2Q7L3T8 475 aaKnown RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 ZBED8Q8IZ13 594 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBC1D3Q8IZP1 549 aaPredicted RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 OR14C36Q8NHC7 312 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 PIH1D2Q8WWB5 315 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.14□□□□□ -0.79
CD44-207ENST00000425428 STAMBPL1Q96FJ0 436 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 HHIPQ96QV1 700 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 PARD6BQ9BYG5 372 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 MKRN2Q9H000 416 aaKnown RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 SAYSD1Q9NPB0 183 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 PCDH12Q9NPG4 1184 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 GRHL1Q9NZI5 618 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 SARDHQ9UL12 918 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 PSMD11O00231 422 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 AP1G1O43747 822 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 TMEM63AO94886 807 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 TIMP2P16035 220 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 TPH1P17752 444 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 GABRG2P18507 467 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 PGAM1P18669 254 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 COL9A1P20849 921 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 MGAT1P26572 445 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 HNF1BP35680 557 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 PPARGP37231 505 aaPredicted RBP10.13□□□□□ -0.79
CD44-207ENST00000425428 P2RY2P41231 377 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 PRAMEP78395 509 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 BRD3Q15059 726 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 CCDC38Q502W7 563 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 NEK5Q6P3R8 708 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 EMBQ6PCB8 327 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 SLC36A4Q6YBV0 504 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 CCNI2Q6ZMN8 369 aaPredicted RBP10.13□□□□□ -0.79
CD44-207ENST00000425428 C11orf74Q86VG3 221 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 RAVER1Q8IY67 606 aaKnown RBP10.13□□□□□ -0.79
CD44-207ENST00000425428 ZNF687Q8N1G0 1237 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 FBXL6Q8N531 539 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 STYXQ8WUJ0 223 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 PEX13Q92968 403 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 TRIB3Q96RU7 358 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 RANBP9Q96S59 729 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 CDH19Q9H159 772 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 ANKZF1Q9H8Y5 726 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 PREBQ9HCU5 417 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 ZC3H7BQ9UGR2 993 aaKnown RBP10.13□□□□□ -0.79
CD44-207ENST00000425428 PPIL1Q9Y3C6 166 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 ZNF711Q9Y462 761 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 TRPM6Q9BX84 2022 aa10.13□□□□□ -0.79
CD44-207ENST00000425428 TCRBV7S3A2A0A539 114 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 RGSL1A5PLK6 1076 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 FAM47DPA6NHR8 397 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms