RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RDH11Q8TC12 318 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 TEX37Q96LM6 180 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 PLEKHG4BQ96PX9 1271 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 TRPC5OSA6NMA1 111 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 EI24O14681 340 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 SRP72O76094 671 aaKnown RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 IPO13O94829 963 aaKnown RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 SH3BP2P78314 561 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 PCID2Q5JVF3 399 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 TAC4Q86UU9 113 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 TMEM126BQ8IUX1 230 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 APOBEC3FQ8IUX4 373 aaKnown RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 DPF3Q92784 378 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 TMEM74Q96NL1 305 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 MRPL57Q9BQC6 102 aaKnown RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 ANKRD60Q9BZ19 345 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 MARCH4Q9P2E8 410 aaPredicted RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 CPA4Q9UI42 421 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 MYLKQ15746 1914 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 GPR32O75388 356 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 COL6A2P12110 1019 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 CD151P48509 253 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 ARSDP51689 593 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 AARS2Q5JTZ9 985 aaKnown RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 PRAMEF19Q5SWL8 479 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 TBPL2Q6SJ96 375 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 GPR180Q86V85 440 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 KLHL5Q96PQ7 755 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 ADI1Q9BV57 179 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 GSTO2Q9H4Y5 243 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 UBQLN1Q9UMX0 589 aaKnown RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 CSADQ9Y600 493 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 LTBP3Q9NS15 1303 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 A0A0J9YYE9 177 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 KCNH1O95259 989 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 LINC00032P0C843 101 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 PIRTP0C851 137 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 POLD3Q15054 466 aaPredicted RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 HABP4Q5JVS0 413 aaKnown RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 NEPROQ6NW34 567 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 SMG8Q8ND04 991 aaKnown RBP21.06■□□□□ 0.96
CTCF-202ENST00000401394 HASPINQ8TF76 798 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 TANKQ92844 425 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 ESAMQ96AP7 390 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 PTERQ96BW5 349 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 SEPHS2Q99611 448 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 SLC39A8Q9C0K1 460 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 CXorf21Q9HAI6 301 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 CMTM6Q9NX76 183 aa21.06■□□□□ 0.96
CTCF-202ENST00000401394 ZNF182P17025 639 aaPredicted RBP21.05■□□□□ 0.96
CTCF-202ENST00000401394 DIO3P55073 304 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 ATP1A4Q13733 1029 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 PIWIL4Q7Z3Z4 852 aaKnown RBP21.05■□□□□ 0.96
CTCF-202ENST00000401394 MAGEE2Q8TD90 523 aaPredicted RBP21.05■□□□□ 0.96
CTCF-202ENST00000401394 DNAI2Q9GZS0 605 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 POLR1BQ9H9Y6 1135 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 MEAF6Q9HAF1 191 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 MID2Q9UJV3 735 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 MAGEB16A2A368 324 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 SLCO1B7G3V0H7 640 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 GIPC1O14908 333 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 INPP4BO15327 924 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 SNAP29O95721 258 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 SQLEQ14534 574 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 AAK1Q2M2I8 961 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 MAP7D1Q3KQU3 841 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 SLC15A3Q8IY34 581 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 C3orf58Q8NDZ4 430 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 OR2T34Q8NGX1 318 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 OR2T3Q8NH03 318 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 FSD1LQ9BXM9 530 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 RBM22Q9NW64 420 aaKnown RBP eCLIP21.05■□□□□ 0.96
CTCF-202ENST00000401394 CORINQ9Y5Q5 1042 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 DNAJC15Q9Y5T4 150 aa21.05■□□□□ 0.96
CTCF-202ENST00000401394 PIGFQ07326 219 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 CACNB2Q08289 660 aaPredicted RBP21.04■□□□□ 0.96
CTCF-202ENST00000401394 OTUD3Q5T2D3 398 aaPredicted RBP21.04■□□□□ 0.96
CTCF-202ENST00000401394 SNX29P2Q8IUI4 249 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 DDIASQ8IXT1 998 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 OR6P1Q8NGX9 317 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 TNIP3Q96KP6 325 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 NPLQ9BXD5 320 aaPredicted RBP21.04■□□□□ 0.96
CTCF-202ENST00000401394 OSBPL6Q9BZF3 934 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 UTP6Q9NYH9 597 aaKnown RBP21.04■□□□□ 0.96
CTCF-202ENST00000401394 TIMM22Q9Y584 194 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 H3BMQ9 156 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 FZD9O00144 591 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 ELK4P28324 431 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 PRKAA2P54646 552 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 PPP1R8Q12972 351 aaKnown RBP21.04■□□□□ 0.96
CTCF-202ENST00000401394 ANKRD34AQ69YU3 496 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 PPP4R4Q6NUP7 873 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 ERMP1Q7Z2K6 904 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 ARHGAP12Q8IWW6 846 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 LPPQ93052 612 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 COG8Q96MW5 612 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.04■□□□□ 0.96
CTCF-202ENST00000401394 SH3BP1Q9Y3L3 701 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 TCAF1Q9Y4C2 921 aa21.04■□□□□ 0.96
CTCF-202ENST00000401394 NRCAMQ92823 1304 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms