RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TUFMP49411 452 aaKnown RBP18.62■□□□□ 0.57
USP48-204ENST00000400301 GALNT2Q10471 571 aa18.62■□□□□ 0.57
USP48-204ENST00000400301 DENND1CQ8IV53 801 aa18.62■□□□□ 0.57
USP48-204ENST00000400301 FAM156AQ8NDB6 213 aa18.62■□□□□ 0.57
USP48-204ENST00000400301 RNF145Q96MT1 663 aa18.62■□□□□ 0.57
USP48-204ENST00000400301 ACTR8Q9H981 624 aa18.62■□□□□ 0.57
USP48-204ENST00000400301 ZMYM5Q9UJ78 669 aa18.62■□□□□ 0.57
USP48-204ENST00000400301 EVPLLA8MZ36 301 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 LDLRP01130 860 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 LINC00032P0C843 101 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 TRNP1Q6NT89 227 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 RETSATQ6NUM9 610 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 ENDOVQ8N8Q3 282 aaKnown RBP18.61■□□□□ 0.57
USP48-204ENST00000400301 PSMG2Q969U7 264 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 PTCD3Q96EY7 689 aaKnown RBP18.61■□□□□ 0.57
USP48-204ENST00000400301 DNMT3LQ9UJW3 386 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 ESRRBO95718 433 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 PRKAR2AP13861 404 aaKnown RBP18.61■□□□□ 0.57
USP48-204ENST00000400301 CXCR3P49682 368 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 INHBEP58166 350 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 GRAMD4Q6IC98 578 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 KIAA0930Q6ICG6 404 aaPredicted RBP18.61■□□□□ 0.57
USP48-204ENST00000400301 CNTD1Q8N815 330 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 DHRS4Q9BTZ2 278 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 C15orf38-AP3S2A0A0A6YYH1 394 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 AHCYL1O43865 530 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 HLA-DQB2P05538 268 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 ETS2P15036 469 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 GTF2H3Q13889 308 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 IL27RAQ6UWB1 636 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 LPCAT2Q7L5N7 544 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 ARPINQ7Z6K5 226 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 FCRL3Q96P31 734 aaPredicted RBP18.61■□□□□ 0.57
USP48-204ENST00000400301 HAPLN3Q96S86 360 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 EBF3Q9H4W6 596 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 EGFL7Q9UHF1 273 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 PCDHB8Q9UN66 801 aa18.61■□□□□ 0.57
USP48-204ENST00000400301 RAD51BO15315 384 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 ATP6V1B2P21281 511 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 DUSP4Q13115 394 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 SYTL3Q4VX76 610 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 DEFB128Q7Z7B8 93 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 CIR1Q86X95 450 aaPredicted RBP18.6■□□□□ 0.57
USP48-204ENST00000400301 HERC6Q8IVU3 1022 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 ACTRT2Q8TDY3 377 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 MRPS31Q92665 395 aaKnown RBP18.6■□□□□ 0.57
USP48-204ENST00000400301 OSBPL2Q9H1P3 480 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 SF3B1O75533 1304 aaKnown RBP eCLIP18.6■□□□□ 0.573e-6■■■■■ 49.3
USP48-204ENST00000400301 ALDH1A1P00352 501 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 HECTD3Q5T447 861 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 MILR1Q7Z6M3 343 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 CDYL2Q8N8U2 506 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 TMCC1O94876 653 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 DHRS4L1P0CG22 281 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 ITGAXP20702 1163 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 RPL5P46777 297 aaKnown RBP18.6■□□□□ 0.57
USP48-204ENST00000400301 ATN1P54259 1190 aaPredicted RBP18.6■□□□□ 0.57
USP48-204ENST00000400301 AFTPHQ6ULP2 937 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 TNIP2Q8NFZ5 429 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 MKS1Q9NXB0 559 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 A8MX80 341 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 FAM163BP0C2L3 166 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 AQP4P55087 323 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 ITGA7Q13683 1181 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 PPM1LQ5SGD2 360 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 CASP10Q92851 521 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 DPY30Q9C005 99 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 SLC2A6Q9UGQ3 507 aa18.6■□□□□ 0.57
USP48-204ENST00000400301 SOCS7O14512 581 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 FAM189A1O60320 539 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 GPR32O75388 356 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 ADSLP30566 484 aaPredicted RBP18.59■□□□□ 0.57
USP48-204ENST00000400301 RGMBQ6NW40 437 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 TMEM40Q8WWA1 233 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 EMID1Q96A84 441 aaPredicted RBP18.59■□□□□ 0.57
USP48-204ENST00000400301 GPR22Q99680 433 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 DLX3O60479 287 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 PLD1Q13393 1074 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 KCNA10Q16322 511 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 FBXO48Q5FWF7 155 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 RNF168Q8IYW5 571 aaPredicted RBP18.59■□□□□ 0.57
USP48-204ENST00000400301 OR4K2Q8NGD2 314 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 GFM2Q969S9 779 aaKnown RBP18.59■□□□□ 0.57
USP48-204ENST00000400301 TM6SF2Q9BZW4 377 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.59■□□□□ 0.57
USP48-204ENST00000400301 CENPLQ8N0S6 344 aaPredicted RBP18.59■□□□□ 0.57
USP48-204ENST00000400301 ADCY4Q8NFM4 1077 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 FIG4Q92562 907 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 LPGAT1Q92604 370 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 C19orf60Q96EN9 201 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 DNAJC1Q96KC8 554 aaKnown RBP18.59■□□□□ 0.57
USP48-204ENST00000400301 C9orf16Q9BUW7 83 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 C1orf50Q9BV19 199 aa18.59■□□□□ 0.57
USP48-204ENST00000400301 A0A0J9YYE9 177 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 LPOP22079 712 aaPredicted RBP18.58■□□□□ 0.57
USP48-204ENST00000400301 TAZQ16635 292 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 ARMC12Q5T9G4 340 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 SZRD1Q7Z422 152 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 OSCP1Q8WVF1 389 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 BDH2Q9BUT1 245 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms