RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SQORQ9Y6N5 450 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 LOC102723996A0A087X1L8 192 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 DRGXA6NNA5 263 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 GPR89AB7ZAQ6 455 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 H0YC42 278 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 CCDC188H7C350 402 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 SGK1O00141 431 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 QSOX1O00391 747 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 PER2O15055 1255 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 RGS10O43665 173 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 KIAA0754O94854 1291 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 SPDEFO95238 335 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 KLKB1P03952 638 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 ZFYP08048 801 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 GPR89BP0CG08 455 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 EGR2P11161 476 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TOP1P11387 765 aaKnown RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 SRCP12931 536 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 HGFP14210 728 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TRIM21P19474 475 aaKnown RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 SP100P23497 879 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 RBL1P28749 1068 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 THBS4P35443 961 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 PNLIPRP2P54317 469 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 RAP2BP61225 183 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TRA2BP62995 288 aaKnown RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 ARHGAP8P85298 464 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 DMTNQ08495 405 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TEFQ10587 303 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 GEN1Q17RS7 908 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 C15orf59Q2T9L4 293 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 P3H1Q32P28 736 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 DPCR1Q3MIW9 517 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 CAVIN4Q5BKX8 364 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 C10orf76Q5T2E6 689 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 CES4AQ5XG92 561 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 HMBOX1Q6NT76 420 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 KIAA1324Q6UXG2 1013 aaKnown RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 CEP57Q86XR8 500 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 DZIP1Q86YF9 867 aaKnown RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 MMP21Q8N119 569 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TC2NQ8N9U0 490 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 BOLLQ8N9W6 283 aaKnown RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 IQUBQ8NA54 791 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 NLGN4YQ8NFZ3 816 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 SUN3Q8TAQ9 357 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 NEK9Q8TD19 979 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 PRR11Q96HE9 360 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 LRIG1Q96JA1 1093 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 GAD1Q99259 594 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 ZPBPQ9BS86 351 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 KIFC3Q9BVG8 833 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TEX101Q9BY14 249 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TRIM31Q9BZY9 425 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TTYH3Q9C0H2 523 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 C17orf75Q9HAS0 396 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 KCNK9Q9NPC2 374 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 CWC15Q9P013 229 aaKnown RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 TRPC5Q9UL62 973 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-204ENST00000399489 USP22Q9UPT9 525 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 PCDHB7Q9Y5E2 793 aa4.21□□□□□ -1.74
HMGB1-204ENST00000399489 RAD54L2Q9Y4B4 1467 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SYCE3A1L190 88 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SMIM30A4D0T7 59 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SLC9B1P1A6NJY1 282 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 KPNA7A9QM74 516 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SLC33A1O00400 549 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 CD3EAPO15446 510 aaKnown RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 CTIFO43310 598 aaKnown RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SPRY1O43609 319 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 LIASO43766 372 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 LETM1O95202 739 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 ZNF8P17098 575 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 ASMTP46597 345 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 ARCN1P48444 511 aaKnown RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 TOB1P50616 345 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 ACTR1AP61163 376 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 STX1BP61266 288 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 RBM6P78332 1123 aaKnown RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 COG7P83436 770 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 RUNX1T1Q06455 604 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 FRG1Q14331 258 aaKnown RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 IQCB1Q15051 598 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 RPS6KA1Q15418 735 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 AAK1Q2M2I8 961 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 TMEM196Q5HYL7 178 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 TMEM81Q6P7N7 255 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SLC46A3Q7Z3Q1 461 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 MAPKAPK5Q8IW41 473 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SLC44A3Q8N4M1 653 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 CAMKVQ8NCB2 501 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 RBM15BQ8NDT2 890 aaKnown RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 OR56A1Q8NGH5 318 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 DNAJB14Q8TBM8 379 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 CCDC110Q8TBZ0 833 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 ASB10Q8WXI3 467 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 RAB7BQ96AH8 199 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 TUBGCP3Q96CW5 907 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 RNF31Q96EP0 1072 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SLC46A1Q96NT5 459 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms