RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CYP2A6P11509 494 aaPredicted RBP14.29□□□□□ -0.12
SKA1-202ENST00000398452 HOXB2P14652 356 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 AVPR2P30518 371 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 GKP32189 559 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 WASP42768 502 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 MAGEA3P43357 314 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 CHRNA4P43681 627 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 KYNUQ16719 465 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 EMC10Q5UCC4 262 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 ERAP2Q6P179 960 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 CAPN12Q6ZSI9 719 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 ZNF534Q76KX8 674 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 GLT6D1Q7Z4J2 308 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 TMIEQ8NEW7 156 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 HCAR2Q8TDS4 363 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 TRABDQ9H4I3 376 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 SYBUQ9NX95 663 aa14.29□□□□□ -0.12
SKA1-202ENST00000398452 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.29□□□□□ -0.12
SKA1-202ENST00000398452 A0A087WUV0 522 aaPredicted RBP14.28□□□□□ -0.12
SKA1-202ENST00000398452 HTRA2O43464 458 aaPredicted RBP14.28□□□□□ -0.12
SKA1-202ENST00000398452 ATG13O75143 517 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 RNF40O75150 1001 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 BANF1O75531 89 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 IVLP07476 585 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 ATXN1LP0C7T5 689 aaKnown RBP14.28□□□□□ -0.12
SKA1-202ENST00000398452 PRKCHP24723 683 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 STX2P32856 288 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 KIR2DL1P43626 348 aaPredicted RBP14.28□□□□□ -0.12
SKA1-202ENST00000398452 UBXN2BQ14CS0 331 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 MSS51Q4VC12 460 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 ZNF805Q5CZA5 627 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 SPANXN3Q5MJ09 141 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 CERCAMQ5T4B2 595 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 C9orf64Q5T6V5 341 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 C3orf62Q6ZUJ4 267 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 SFTPA1Q8IWL2 248 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 SYNPOQ8N3V7 929 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 GOLGA6L1Q8N7Z2 621 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 TXNDC5Q8NBS9 432 aaKnown RBP14.28□□□□□ -0.12
SKA1-202ENST00000398452 PIP4K2CQ8TBX8 421 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 BRSK1Q8TDC3 778 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 CDKL2Q92772 493 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 ZNF669Q96BR6 464 aaPredicted RBP14.28□□□□□ -0.12
SKA1-202ENST00000398452 SIGLEC10Q96LC7 697 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 TRIB3Q96RU7 358 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 RANBP9Q96S59 729 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 GPR63Q9BZJ6 419 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 KCNH6Q9H252 994 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 SEMA4AQ9H3S1 761 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 MFSD1Q9H3U5 465 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 MTG2Q9H4K7 406 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 MRM3Q9HC36 420 aaKnown RBP14.28□□□□□ -0.12
SKA1-202ENST00000398452 ZDHHC4Q9NPG8 344 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 PRSS16Q9NQE7 514 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 NINJ2Q9NZG7 142 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.28□□□□□ -0.12
SKA1-202ENST00000398452 SOX13Q9UN79 622 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 TEX264Q9Y6I9 313 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 RPS6KL1Q9Y6S9 549 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 WASF2Q9Y6W5 498 aa14.28□□□□□ -0.12
SKA1-202ENST00000398452 KIAA1549LQ6ZVL6 1849 aa14.27□□□□□ -0.12
SKA1-202ENST00000398452 WDFY4Q6ZS81 3184 aa14.27□□□□□ -0.12
SKA1-202ENST00000398452 FAM237BA0A1B0GVD1 139 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 GOLGA6L10A6NI86 522 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 TRAFD1O14545 582 aaPredicted RBP14.27□□□□□ -0.13
SKA1-202ENST00000398452 RIPK2O43353 540 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 ADH1BP00325 375 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 PDHA1P08559 390 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 HSD17B3P37058 310 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 PSMD8P48556 350 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 PTPN5P54829 565 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 CRADDP78560 199 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 GPS2Q13227 327 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 ARHGEF7Q14155 803 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 CASP8Q14790 479 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 FASTKD3Q14CZ7 662 aaKnown RBP14.27□□□□□ -0.13
SKA1-202ENST00000398452 QPCTQ16769 361 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 SKIDA1Q1XH10 827 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 ZNF776Q68DI1 518 aaPredicted RBP14.27□□□□□ -0.13
SKA1-202ENST00000398452 PKN3Q6P5Z2 889 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 FBXL19Q6PCT2 694 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 CROCCP2Q86T23 111 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 TTC7BQ86TV6 843 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.27□□□□□ -0.13
SKA1-202ENST00000398452 FLCNQ8NFG4 579 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 RPLP0P6Q8NHW5 317 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 GSDMBQ8TAX9 411 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 ACOX2Q99424 681 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 PPANQ9NQ55 473 aaKnown RBP14.27□□□□□ -0.13
SKA1-202ENST00000398452 DKK3Q9UBP4 350 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 PKP3Q9Y446 797 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 TCAF1Q9Y4C2 921 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 IKBKGQ9Y6K9 419 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 FAM169AQ9Y6X4 670 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 CACNA1HO95180 2353 aa14.27□□□□□ -0.13
SKA1-202ENST00000398452 MIA3Q5JRA6 1907 aa14.26□□□□□ -0.13
SKA1-202ENST00000398452 A0A0J9YYE9 177 aa14.26□□□□□ -0.13
SKA1-202ENST00000398452 KANSL1LA0AUZ9 987 aa14.26□□□□□ -0.13
SKA1-202ENST00000398452 UPK3BL1B0FP48 263 aa14.26□□□□□ -0.13
SKA1-202ENST00000398452 UPK3BL2E5RIL1 263 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms