RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 MSH3P20585 1137 aa3.4□□□□□ -1.86
VPS13C-203ENST00000395896 PPIBP23284 216 aaKnown RBP3.4□□□□□ -1.86
VPS13C-203ENST00000395896 SLC1A6P48664 564 aa3.4□□□□□ -1.86
VPS13C-203ENST00000395896 ZNF33BQ06732 778 aa3.4□□□□□ -1.86
VPS13C-203ENST00000395896 MED21Q13503 144 aa3.4□□□□□ -1.86
VPS13C-203ENST00000395896 KATNBL1Q9H079 304 aa3.4□□□□□ -1.86
VPS13C-203ENST00000395896 HEATR1Q9H583 2144 aaKnown RBP3.4□□□□□ -1.86
VPS13C-203ENST00000395896 HEY2Q9UBP5 337 aa3.4□□□□□ -1.86
VPS13C-203ENST00000395896 SNX6Q9UNH7 406 aa3.4□□□□□ -1.86
VPS13C-203ENST00000395896 MTMR11A4FU01 709 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CLDN5O00501 218 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 SOCS7O14512 581 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CD3EAPO15446 510 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 EDF1O60869 148 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 IL1BP01584 269 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CCDC166P0CW27 439 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 HALP42357 657 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 SCTRP47872 440 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 KDSRQ06136 332 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ZBTB17Q13105 803 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 KRT72Q14CN4 511 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 MTSS1LQ765P7 747 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 DDX53Q86TM3 631 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RNF135Q8IUD6 432 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 DPF3Q92784 378 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 EME1Q96AY2 570 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 HOPXQ9BPY8 73 aaPredicted RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ZSCAN5AQ9BUG6 496 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 WDR6Q9NNW5 1121 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CD274Q9NZQ7 290 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 DNAJB4Q9UDY4 337 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 PRPF19Q9UMS4 504 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RNF103-CHMP3A0A140T963 221 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 C16orf96A6NNT2 1141 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 DEAF1O75398 565 aaPredicted RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CHRNA1P02708 482 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TACR2P21452 398 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RPL34P49207 117 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 SGCGQ13326 291 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TAF1AQ15573 450 aaPredicted RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 FSTL4Q6MZW2 842 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 PAGE2Q7Z2X7 111 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 GALNT7Q86SF2 657 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TMCO5AQ8N6Q1 288 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TDRD5Q8NAT2 981 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TSEN2Q8NCE0 465 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 KBTBD7Q8WVZ9 684 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 OR8D1Q8WZ84 308 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 KCNJ9Q92806 393 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TUBGCP5Q96RT8 1024 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 SPAG4Q9NPE6 437 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 GDE1Q9NZC3 331 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CPSF2Q9P2I0 782 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 KLHL42Q9P2K6 505 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 MDC1Q14676 2089 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ANP32DO95626 131 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CBSLP0DN79 551 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TFEBP19484 476 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 NDUFS1P28331 727 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TTKP33981 857 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CBSP35520 551 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CCL23P55773 120 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 GAD2Q05329 585 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TTC27Q6P3X3 843 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TTC7BQ86TV6 843 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CARNMT1Q8N4J0 409 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 MAB21L3Q8N8X9 362 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 PTCD3Q96EY7 689 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 PRRG3Q9BZD7 231 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 PCBD2Q9H0N5 130 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RAD21L1Q9H4I0 556 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ACTR8Q9H981 624 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ADA2Q9NZK5 511 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ANKRD11Q6UB99 2663 aaPredicted RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 WDR27A2RRH5 827 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 CLGNO14967 610 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RGS14O43566 566 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 AVILO75366 819 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RPP40O75818 363 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 HMBSP08397 361 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ELFN1P0C7U0 828 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 HAPLN1P10915 354 aaPredicted RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 SLC2A4P14672 509 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 PPP2R1BP30154 601 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 KCNJ11Q14654 390 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ADRM1Q16186 407 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RAB41Q5JT25 222 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TMTC4Q5T4D3 741 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RHBDF2Q6PJF5 856 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 METTL2AQ96IZ6 378 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 PPP3R2Q96LZ3 170 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 RIPOR3Q96MK2 946 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 GBP5Q96PP8 586 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 ECSITQ9BQ95 431 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 KIFC1Q9BW19 673 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 TDP1Q9NUW8 608 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 DNAJC16Q9Y2G8 782 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 FAM32AQ9Y421 112 aaKnown RBP3.4□□□□□ -1.87
VPS13C-203ENST00000395896 INSL5Q9Y5Q6 135 aa3.4□□□□□ -1.87
VPS13C-203ENST00000395896 MYO9AB2RTY4 2548 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms