RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TARSP26639 723 aaKnown RBP10.36□□□□□ -0.75
COL6A3-205ENST00000392004 PARP6Q2NL67 630 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 MTSS1LQ765P7 747 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 HAO1Q9UJM8 370 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A9O60656 530 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A6P19224 532 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A1P22309 533 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A4P22310 534 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A3P35503 534 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A5P35504 534 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CTSOP43234 321 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-205ENST00000392004 POLE2P56282 527 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CAV1Q03135 178 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CSHL1Q14406 222 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 FYB2Q5VWT5 728 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 TTC27Q6P3X3 843 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CNSTQ6PJW8 725 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 MFSD3Q96ES6 412 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A7Q9HAW7 530 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A10Q9HAW8 530 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 UGT1A8Q9HAW9 530 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 ZDHHC7Q9NXF8 308 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CD274Q9NZQ7 290 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 TRHDEQ9UKU6 1024 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 COQ6Q9Y2Z9 468 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 A0A1W2PP55 124 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 DPPA5A6NC42 116 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 KLHL33A6NCF5 533 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 OR51F1A6NGY5 319 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CDH16O75309 829 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 ALDH1A2O94788 518 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 KLKB1P03952 638 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 LINGO3P0C6S8 592 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CREB1P16220 341 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 ATP6V1C1P21283 382 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 FSCBQ5H9T9 825 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 FNBP1LQ5T0N5 605 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 FAM46CQ5VWP2 391 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 DPY19L3Q6ZPD9 716 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 TRIM74Q86UV6 250 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 WBP2Q969T9 261 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 CHFRQ96EP1 664 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 MYO19Q96H55 970 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 TBATAQ96M53 351 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 HEPHQ9BQS7 1158 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 VN1R3Q9BXE9 311 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 MYLK2Q9H1R3 596 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 MAGEH1Q9H213 219 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 ACSS2Q9NR19 701 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 WHRNQ9P202 907 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 PSMD13Q9UNM6 376 aa10.36□□□□□ -0.75
COL6A3-205ENST00000392004 SUPT3HB4E1H0 165 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 SUPT3HO75486 399 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 METTL18O95568 372 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 TTC4O95801 387 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 DCNP07585 359 aaKnown RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 HADHAP40939 763 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 CLCN4P51793 760 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 YBEYP58557 167 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 MPP3Q13368 585 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 PARP15Q460N3 678 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 PITRM1Q5JRX3 1037 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 ANKRD22Q5VYY1 191 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 ADAMTS19Q8TE59 1207 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 STMN2Q93045 179 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 FOPNLQ96NB1 174 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 NECAB3Q96P71 396 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 HHIPQ96QV1 700 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 HAPLN3Q96S86 360 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 TRIM54Q9BYV2 358 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 LMAN1LQ9HAT1 526 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 DLGAP2Q9P1A6 1054 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 CTNNAL1Q9UBT7 734 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 TRMT6Q9UJA5 497 aaKnown RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 DCTN4Q9UJW0 460 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 HEATR9A2RTY3 570 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 A6NHS1 94 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 PSMD3O43242 534 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 MMP20O60882 483 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 PEX5P50542 639 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 CCNG1P51959 295 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 HYAL1Q12794 435 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 STAT4Q14765 748 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 KLHL38Q2WGJ6 581 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 XKR4Q5GH76 650 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 HID1Q8IV36 788 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 FAM3CQ92520 227 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 MAML1Q92585 1016 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 POLR3BQ9NW08 1133 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 NENFQ9UMX5 172 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 DLEC1Q9Y238 1755 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 SCN1AP35498 2009 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 DNALI1O14645 258 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 FSCN2O14926 492 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 NVLO15381 856 aaKnown RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 HLA-DQB2P05538 268 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 DLDP09622 509 aaKnown RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 MAOBP27338 520 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms