RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TMEM121Q9BTD3 319 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 CCSER1Q9C0I3 900 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 AVENQ9NQS1 362 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-206ENST00000367253 ABCB10Q9NRK6 738 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 FAM49BQ9NUQ9 324 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 TDP1Q9NUW8 608 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 ING3Q9NXR8 418 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 HSPBP1Q9NZL4 362 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 NMT2O60551 498 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 PHF2O75151 1096 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 CYP7B1O75881 506 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 OGNP20774 298 aaKnown RBP8.68□□□□□ -1.02
SYNE1-206ENST00000367253 F8A1P23610 371 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 PSMB9P28065 219 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 NUDT2P50583 147 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 TAF5Q15542 800 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 TIGD6Q17RP2 521 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 GLRA4Q5JXX5 417 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 KDM7AQ6ZMT4 941 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 RAB43Q86YS6 212 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 SLC13A5Q86YT5 568 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-206ENST00000367253 SVOPQ8N4V2 548 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 RBBP8NLQ8NC74 664 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-206ENST00000367253 HNRNPLLQ8WVV9 542 aaKnown RBP8.68□□□□□ -1.02
SYNE1-206ENST00000367253 RFFLQ8WZ73 363 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 RFKQ969G6 155 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 TMEM79Q9BSE2 394 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 NKX2-4Q9H2Z4 354 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.68□□□□□ -1.02
SYNE1-206ENST00000367253 PCDHGB5Q9Y5G0 923 aa8.68□□□□□ -1.02
SYNE1-206ENST00000367253 SMIM31A0A1B0GVY4 71 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ISM1B1AKI9 464 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 CCL16O15467 120 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 SLC25A12O75746 678 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 CRYZL1O95825 349 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 EOMESO95936 686 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 TP53P04637 393 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 CLEC3BP05452 202 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 RPL17P18621 184 aaKnown RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 RGS6P49758 472 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 GNG2P59768 71 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 PCSK7Q16549 785 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 TRMT5Q32P41 509 aaKnown RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ZFP69Q49AA0 526 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 UBXN11Q5T124 520 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 LYPLAL1Q5VWZ2 237 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ZBTB49Q6ZSB9 765 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 HORMAD2Q8N7B1 307 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 TPCN2Q8NHX9 752 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 C2orf15Q8WU43 125 aaKnown RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 CLIP3Q96DZ5 547 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ZIM3Q96PE6 472 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 RBM15Q96T37 977 aaKnown RBP eCLIP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 C1orf50Q9BV19 199 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 FAIM2Q9BWQ8 316 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 RIBC2Q9H4K1 309 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 MANSC1Q9H8J5 431 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 POLR1BQ9H9Y6 1135 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 MARCH2Q9P0N8 246 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ZSWIM5Q9P217 1185 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 PCDHGC3Q9UN70 934 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 SGTAO43765 313 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 SPAG6O75602 509 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 HEXBP07686 556 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 SMAD3P84022 425 aaKnown RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ARF5P84085 180 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 PCDH1Q08174 1060 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 BOLA3Q53S33 107 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 C2CD6Q53TS8 623 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 PITRM1Q5JRX3 1037 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 INTS5Q6P9B9 1019 aaKnown RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 PTF1AQ7RTS3 328 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ATL1Q8WXF7 558 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 MAP4K1Q92918 833 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ECSITQ9BQ95 431 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ABCB9Q9NP78 766 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 PXMP2Q9NR77 195 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 CYP39A1Q9NYL5 469 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 POLLQ9UGP5 575 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 FAM149AA5PLN7 773 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 AGRPO00253 132 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ITGB3P05106 788 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 C8AP07357 584 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 PLEKP08567 350 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ALPIP09923 528 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 FCGR1AP12314 374 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 TMEM11P17152 192 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 HSD17B7P56937 341 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 TOP3AQ13472 1001 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 PDIA5Q14554 519 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 ZDHHC20Q5W0Z9 365 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 FBXO42Q6P3S6 717 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 RASGRP2Q7LDG7 609 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 RHBDD1Q8TEB9 315 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 HDAC7Q8WUI4 952 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 C1orf54Q8WWF1 131 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 SERAC1Q96JX3 654 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 AP1S3Q96PC3 154 aa8.67□□□□□ -1.02
SYNE1-206ENST00000367253 KLF6Q99612 283 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-206ENST00000367253 TIMM29Q9BSF4 260 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms