RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 IFT81Q8WYA0 676 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SCAMP4Q969E2 229 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FAM131CQ96AQ9 280 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SIGLEC10Q96LC7 697 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SERPINB12Q96P63 405 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 VAT1Q99536 393 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ORAI3Q9BRQ5 295 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 LRFN3Q9BTN0 628 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FRMD8P1Q9BZ68 369 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 C6orf106Q9H6K1 298 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 ITM2CQ9NQX7 267 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 HOMER3Q9NSC5 361 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 B4GALT6Q9UBX8 382 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SUN2Q9UH99 717 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PNMA8BQ9ULN7 279 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 CEP250Q9BV73 2442 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 A0A0J9YYE9 177 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 GOLGA6L10A0A0M3HER8 536 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 OR51F1A6NGY5 319 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 H0Y858 1186 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 GAPDHSO14556 408 aaPredicted RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 DNALI1O14645 258 aaPredicted RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 LDB2O43679 373 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 SUN1O94901 812 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 IGSF6O95976 241 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 PAK4O96013 591 aaPredicted RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 TRBC1P01850 177 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ADRB3P13945 408 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 PTGER3P43115 390 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MAGEA3P43357 314 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MAGEA6P43360 314 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 DGKEP52429 567 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 PGGT1BP53609 377 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 VSNL1P62760 191 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 FAM193AP78312 1265 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 CSTF1Q05048 431 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 Q6ZVL8 140 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 LYSMD3Q7Z3D4 306 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 BMP8AQ7Z5Y6 402 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 PLA2G15Q8NCC3 412 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 OR13C4Q8NGS5 318 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MFSD3Q96ES6 412 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 SCRN2Q96FV2 425 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MSANTD3Q96H12 275 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 FZD3Q9NPG1 666 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MBNL1Q9NR56 388 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 TMEM74BQ9NUR3 256 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 USP36Q9P275 1121 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 PAK5Q9P286 719 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 SLC17A6Q9P2U8 582 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 TMPRSS11EQ9UL52 423 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 NFU1Q9UMS0 254 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MRPS17Q9Y2R5 130 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 PCYT1BQ9Y5K3 369 aaPredicted RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 FADS3Q9Y5Q0 445 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 IGHV1OR15-9A0A0B4J2B8 117 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 CXorf51AA0A1B0GTR3 108 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 IGLON5A6NGN9 336 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 SLC4A1P02730 911 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 IGHV4-34P06331 123 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MGAT1P26572 445 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ARNTP27540 789 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ETV3P41162 512 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 RECQLP46063 649 aaPredicted RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 ADPRHP54922 357 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 DHX34Q14147 1143 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 EOGTQ5NDL2 527 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 TPRG1LQ5T0D9 272 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 LRRC66Q68CR7 880 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 C8orf74Q6P047 294 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ERN2Q76MJ5 926 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 SLC41A1Q8IVJ1 513 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 TMEFF1Q8IYR6 380 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 DTWD2Q8NBA8 298 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 OR14C36Q8NHC7 312 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 OR8D1Q8WZ84 308 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ART4Q93070 314 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 RMDN1Q96DB5 314 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 TOE1Q96GM8 510 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 MYOCQ99972 504 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ATP13A3Q9H7F0 1226 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ARNT2Q9HBZ2 717 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ARFGAP3Q9NP61 516 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 CASS4Q9NQ75 786 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 GDF3Q9NR23 364 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 TPX2Q9ULW0 747 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 FNDC3AQ9Y2H6 1198 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 PPIL1Q9Y3C6 166 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 CACNA1EQ15878 2313 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 CFAP69A5D8W1 941 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 MTSS1O43312 755 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 SLU7O95391 586 aaKnown RBP4.04□□□□□ -1.76
LIG4-201ENST00000356922 FUCA1P04066 466 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 ITGB7P26010 798 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 NMBRP28336 390 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 PI4KAP42356 2102 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 LMAN1P49257 510 aa4.04□□□□□ -1.76
LIG4-201ENST00000356922 LIG3P49916 1009 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms