RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 GOT1P17174 413 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 BMP8BP34820 402 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 DRG2P55039 364 aaKnown RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 RING1Q06587 406 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FAM72AQ5TYM5 149 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 MANEALQ5VSG8 457 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 PLPP4Q5VZY2 271 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FAM72DQ6L9T8 149 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 SYDE1Q6ZW31 735 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TRMT10CQ7L0Y3 403 aaKnown RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 GSTA5Q7RTV2 222 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ITIH5Q86UX2 942 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FAM72BQ86X60 149 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ARID3BQ8IVW6 561 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 DCUN1D1Q96GG9 259 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 C1orf74Q96LT6 269 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 CCDC77Q9BR77 488 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 PBX4Q9BYU1 374 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 CCSER2Q9H7U1 834 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 IL21Q9HBE4 155 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TBCCD1Q9NVR7 557 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 COQ3Q9NZJ6 369 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 UXTQ9UBK9 157 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 DNPEPQ9ULA0 475 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 MAGED2Q9UNF1 606 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 CORINQ9Y5Q5 1042 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ATG2AQ2TAZ0 1938 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 A0A1W2PPW3 197 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 AP3B1O00203 1094 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 DNAJA2O60884 412 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 GMNNO75496 209 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 PAPLNO95428 1278 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 F11P03951 625 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ZSCAN5DPP0CG00 497 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 SLC2A3P11169 496 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 PRKACBP22694 351 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 KLRC2P26717 231 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 HOXC13P31276 330 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 HTR7P34969 479 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 IRS1P35568 1242 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 PBX2P40425 430 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 DNASE1L3Q13609 305 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 NOMO1Q15155 1222 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 CROCCP2Q86T23 111 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TRABD2AQ86V40 505 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 BPHLQ86WA6 291 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 KREMEN2Q8NCW0 462 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ACTL9Q8TC94 416 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 PYROXD1Q8WU10 500 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 SLC22A17Q8WUG5 538 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 NACC2Q96BF6 587 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TAMM41Q96BW9 452 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 VPS50Q96JG6 964 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 SEMA6AQ9H2E6 1030 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 MANSC1Q9H8J5 431 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 POLE4Q9NR33 117 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 NDUFA13Q9P0J0 144 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 NUDT5Q9UKK9 219 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ANAPC1Q9H1A4 1944 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 APOL1O14791 398 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 DCLK1O15075 740 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TP73O15350 636 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TLR5O60602 858 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FKBP6O75344 327 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TBX18O95935 607 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 GLUD1P00367 558 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TCN1P20061 433 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ARL4AP40617 200 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TPTEP56180 551 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 CDKL1Q00532 357 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 GRM2Q14416 872 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 MAPK11Q15759 364 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 BCL2A1Q16548 175 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TRIM16LQ309B1 348 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FAM214AQ32MH5 1076 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 NCBP2-AS2Q69YL0 99 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 AAGABQ6PD74 315 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TMC8Q8IU68 726 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FAM20CQ8IXL6 584 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FAM111AQ96PZ2 611 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 COPS7BQ9H9Q2 264 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ZNF334Q9HCZ1 680 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TRPM5Q9NZQ8 1165 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 MARCH2Q9P0N8 246 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 TXNDC16Q9P2K2 825 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ARHGAP26Q9UNA1 814 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 A8MX80 341 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 GIPC1O14908 333 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 TRPC1P48995 793 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 NR2C2P49116 596 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 TBX4P57082 545 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 CDK16Q00536 496 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 LMNB2Q03252 620 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 EFEMP1Q12805 493 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 PDIA2Q13087 525 aaKnown RBP10.17□□□□□ -0.78
SYNE1-203ENST00000354674 PTK6Q13882 451 aa10.17□□□□□ -0.78
SYNE1-203ENST00000354674 PAFAH1B3Q15102 231 aaKnown RBP10.17□□□□□ -0.78
SYNE1-203ENST00000354674 SMAD1Q15797 465 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms