RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 KIAA0895LQ68EN5 471 aa22.26■■□□□ 1.15
SHMT1-203ENST00000354098 GRK7Q8WTQ7 553 aa22.26■■□□□ 1.15
SHMT1-203ENST00000354098 MCCC1Q96RQ3 725 aaPredicted RBP22.26■■□□□ 1.15
SHMT1-203ENST00000354098 FSD1LQ9BXM9 530 aa22.26■■□□□ 1.15
SHMT1-203ENST00000354098 EBF2Q9HAK2 575 aa22.26■■□□□ 1.15
SHMT1-203ENST00000354098 FEZ2Q9UHY8 353 aaPredicted RBP22.26■■□□□ 1.15
SHMT1-203ENST00000354098 RPL26L1Q9UNX3 145 aaKnown RBP22.26■■□□□ 1.15
SHMT1-203ENST00000354098 ZBTB32Q9Y2Y4 487 aaPredicted RBP22.26■■□□□ 1.15
SHMT1-203ENST00000354098 MRFAP1Q9Y605 127 aa22.26■■□□□ 1.15
SHMT1-203ENST00000354098 ZNF500O60304 480 aaPredicted RBP22.25■■□□□ 1.15
SHMT1-203ENST00000354098 MMP20O60882 483 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 ECEL1O95672 775 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 NDST3O95803 873 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 FDFT1P37268 417 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 GRIA4P48058 902 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 DHPSP49366 369 aaPredicted RBP22.25■■□□□ 1.15
SHMT1-203ENST00000354098 TMEM52BQ4KMG9 183 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 SIRPB2Q5JXA9 342 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 TSPAN33Q86UF1 283 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 KLK6Q92876 244 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 KRT12Q99456 494 aa22.25■■□□□ 1.15
SHMT1-203ENST00000354098 EPOP01588 193 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 PIRTP0C851 137 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 LHCGRP22888 699 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 MAOBP27338 520 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 TERF1P54274 439 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 ELF2Q15723 593 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 SLC1A5Q15758 541 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 WHAMMP3Q1A5X7 153 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 NEK5Q6P3R8 708 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 RANBP10Q6VN20 620 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 USP45Q70EL2 814 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 DPPA4Q7L190 304 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 ZNF572Q7Z3I7 529 aaPredicted RBP22.24■■□□□ 1.15
SHMT1-203ENST00000354098 HORMAD1Q86X24 394 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 PPP1R2P1Q96PQ5 205 aa22.24■■□□□ 1.15
SHMT1-203ENST00000354098 IGLON5A6NGN9 336 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 RHOBTB1O94844 696 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 LIG3P49916 1009 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 GPS1Q13098 491 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 SEMA5AQ13591 1074 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 ZNF284Q2VY69 593 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 TMEM259Q4ZIN3 620 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 SPDYCQ5MJ68 293 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 TRIM69Q86WT6 500 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 NDUFAF2Q8N183 169 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 CXorf40AQ8TE69 158 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 SNX19Q92543 992 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 SLCO2A1Q92959 643 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 PCED1AQ9H1Q7 454 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 COQ6Q9Y2Z9 468 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 SLCO1B1Q9Y6L6 691 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 CAPN8A6NHC0 703 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 AP2A1O95782 977 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 GAS8O95995 478 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 VIPR1P32241 457 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 NBL1P41271 181 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 CCR5P51681 352 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 RPS21P63220 83 aaKnown RBP22.23■■□□□ 1.15
SHMT1-203ENST00000354098 BASP1P80723 227 aaKnown RBP22.23■■□□□ 1.15
SHMT1-203ENST00000354098 MRPS25P82663 173 aaKnown RBP22.23■■□□□ 1.15
SHMT1-203ENST00000354098 DR1Q01658 176 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 CKAP4Q07065 602 aaKnown RBP22.23■■□□□ 1.15
SHMT1-203ENST00000354098 FGL2Q14314 439 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 PPP1R7Q15435 360 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 CCDC70Q6NSX1 233 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 CRTC1Q6UUV9 634 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 C4orf22Q6V702 233 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 LIPIQ6XZB0 460 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 SUMF1Q8NBK3 374 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 FOXJ1Q92949 421 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 TBL1YQ9BQ87 522 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 THADAQ6YHU6 1953 aa22.23■■□□□ 1.15
SHMT1-203ENST00000354098 GOLGA6CA6NDK9 693 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 GOLGA6BA6NDN3 693 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 GOLGA8CPA6NN73 597 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 MEI4A8MW99 385 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 E7EVH7 732 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 LATO43561 262 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 GOLGA6DP0CG33 693 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 CYP2A6P11509 494 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-203ENST00000354098 ITPKAP23677 461 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 TNNT3P45378 269 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-203ENST00000354098 CNGA3Q16281 694 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 DENND5AQ6IQ26 1287 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 KIAA1161Q6NSJ0 714 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 ORAI3Q9BRQ5 295 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 LRRC40Q9H9A6 602 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 GOLGA6AQ9NYA3 693 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 EIF2B4Q9UI10 523 aaKnown RBP22.22■■□□□ 1.15
SHMT1-203ENST00000354098 SMG5Q9UPR3 1016 aaKnown RBP22.22■■□□□ 1.15
SHMT1-203ENST00000354098 SPO11Q9Y5K1 396 aa22.22■■□□□ 1.15
SHMT1-203ENST00000354098 TTI1O43156 1089 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 HEXIM1O94992 359 aaKnown RBP22.21■■□□□ 1.15
SHMT1-203ENST00000354098 PAK4O96013 591 aaPredicted RBP22.21■■□□□ 1.15
SHMT1-203ENST00000354098 APRTP07741 180 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 C6P13671 934 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 HLA-DPA1P20036 260 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 GRIA1P42261 906 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 LMAN1P49257 510 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms