RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CUZD1Q86UP6 607 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 USP13Q92995 863 aaPredicted RBP21.88■■□□□ 1.09
SHMT1-202ENST00000352886 CRISPLD1Q9H336 500 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 WDR41Q9HAD4 459 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 EFCAB1Q9HAE3 211 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 CRYL1Q9Y2S2 319 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 TLL2Q9Y6L7 1015 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 RTN3O95197 1032 aaPredicted RBP21.87■■□□□ 1.09
SHMT1-202ENST00000352886 IGLV3-27P01718 113 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 PKNOX1P55347 436 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 ZNF423Q2M1K9 1284 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 GPR158Q5T848 1215 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 PIM3Q86V86 326 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 PELI3Q8N2H9 469 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 PPP2R3CQ969Q6 453 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 IFT43Q96FT9 208 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 TBATAQ96M53 351 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 GLT1D1Q96MS3 346 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 POLR1EQ9GZS1 481 aaKnown RBP21.87■■□□□ 1.09
SHMT1-202ENST00000352886 ALG9Q9H6U8 611 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 ZDHHC7Q9NXF8 308 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 VPS28Q9UK41 221 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 ARSAP15289 507 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 MSX2P35548 267 aaPredicted RBP21.87■■□□□ 1.09
SHMT1-202ENST00000352886 DPP6P42658 865 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 MRPL58Q14197 206 aaKnown RBP21.87■■□□□ 1.09
SHMT1-202ENST00000352886 SPPL2BQ8TCT7 592 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 BLOC1S5Q8TDH9 187 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 SH3RF2Q8TEC5 729 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 NPAS2Q99743 824 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 YIPF3Q9GZM5 350 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 RNF186Q9NXI6 227 aa21.87■■□□□ 1.09
SHMT1-202ENST00000352886 TCAF2A6NFQ2 919 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 OR6C75A6NL08 312 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 MUSKO15146 869 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 XRCC1P18887 633 aaPredicted RBP21.86■■□□□ 1.09
SHMT1-202ENST00000352886 PBX3P40426 434 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 C1QTNF8P60827 252 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 FLOT2Q14254 428 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 PTPRCAPQ14761 206 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 EML3Q32P44 896 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 RNF148Q8N7C7 305 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.86■■□□□ 1.09
SHMT1-202ENST00000352886 CCSER2Q9H7U1 834 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 ARL5AQ9Y689 179 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 MTMR11A4FU01 709 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 WISP3O95389 354 aaPredicted RBP21.86■■□□□ 1.09
SHMT1-202ENST00000352886 LYNP07948 512 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 AQP4P55087 323 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 CEACAM7Q14002 265 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 ZNF235Q14590 738 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 NADSYN1Q6IA69 706 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 SLC22A9Q8IVM8 553 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 AFAP1L2Q8N4X5 818 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 TMA16Q96EY4 203 aaKnown RBP21.86■■□□□ 1.09
SHMT1-202ENST00000352886 FAR2Q96K12 515 aa21.86■■□□□ 1.09
SHMT1-202ENST00000352886 DDX50Q9BQ39 737 aaKnown RBP21.86■■□□□ 1.09
SHMT1-202ENST00000352886 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.86■■□□□ 1.09
SHMT1-202ENST00000352886 STX16-NPEPL1H3BU86 382 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 SLC4A1P02730 911 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 GALNT3Q14435 633 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 GK5Q6ZS86 529 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 ISCA2Q86U28 154 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 ABI1Q8IZP0 508 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 MEAF6Q9HAF1 191 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 TMEM161AQ9NX61 479 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 CASQ2O14958 399 aaPredicted RBP21.85■■□□□ 1.09
SHMT1-202ENST00000352886 PRAMEF11O60813 436 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 KCNC1P48547 511 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 YBEYP58557 167 aaPredicted RBP21.85■■□□□ 1.09
SHMT1-202ENST00000352886 FAM45BPQ6NSW5 357 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 RSPO2Q6UXX9 243 aaPredicted RBP21.85■■□□□ 1.09
SHMT1-202ENST00000352886 RNF19BQ6ZMZ0 732 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 APLFQ8IW19 511 aaPredicted RBP21.85■■□□□ 1.09
SHMT1-202ENST00000352886 CFAP52Q8N1V2 620 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 FAM45AQ8TCE6 357 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 DNAJC1Q96KC8 554 aaKnown RBP21.85■■□□□ 1.09
SHMT1-202ENST00000352886 GSTO2Q9H4Y5 243 aa21.85■■□□□ 1.09
SHMT1-202ENST00000352886 TLR5O60602 858 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 GOT2P00505 430 aaKnown RBP21.84■■□□□ 1.09
SHMT1-202ENST00000352886 ZCCHC18P0CG32 403 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 HSPA1AP0DMV8 641 aaKnown RBP21.84■■□□□ 1.09
SHMT1-202ENST00000352886 HSPA1BP0DMV9 641 aaKnown RBP21.84■■□□□ 1.09
SHMT1-202ENST00000352886 MAPKAPK2P49137 400 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 RING1Q06587 406 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 PPP1R3AQ16821 1122 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 RNF220Q5VTB9 566 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 CHSY3Q70JA7 882 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 SLC24A3Q9HC58 644 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 PSMD13Q9UNM6 376 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 GLP2RO95838 553 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 PIRTP0C851 137 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 HLA-DPA1P20036 260 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 TACR2P21452 398 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 MRPS22P82650 360 aaKnown RBP21.84■■□□□ 1.09
SHMT1-202ENST00000352886 XIAPP98170 497 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 ACVR1Q04771 509 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 GALNT1Q10472 559 aaPredicted RBP21.84■■□□□ 1.09
SHMT1-202ENST00000352886 RFTN1Q14699 578 aaPredicted RBP21.84■■□□□ 1.09
SHMT1-202ENST00000352886 FAM219BQ5XKK7 198 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms