RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CYP2C9P11712 490 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 RAB39AQ14964 217 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 FAM83EQ2M2I3 478 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 KIF19Q2TAC6 998 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 BTBD8Q5XKL5 378 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 EDEM1Q92611 657 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 OLFM1Q99784 485 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 FICDQ9BVA6 458 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 ARMC7Q9H6L4 198 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 WDR6Q9NNW5 1121 aaKnown RBP22.48■■□□□ 1.19
TRIM28-202ENST00000341753 DDIT4Q9NX09 232 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 NSMCE4AQ9NXX6 385 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 PCDHGA4Q9Y5G9 962 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 PLXNB2O15031 1838 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 J3QRK9 145 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 CD97P48960 835 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 ATP1A4Q13733 1029 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 DUSP28Q4G0W2 176 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 NOMO2Q5JPE7 1267 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 CYHR1Q6ZMK1 362 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 LRRC52Q8N7C0 313 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 DNAJB3Q8WWF6 145 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 FBXL8Q96CD0 374 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 ZNF419Q96HQ0 510 aaPredicted RBP22.47■■□□□ 1.19
TRIM28-202ENST00000341753 SYT17Q9BSW7 474 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 MED10Q9BTT4 135 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 ULBP1Q9BZM6 244 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 TBC1D23Q9NUY8 699 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 TBCCD1Q9NVR7 557 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 RBM47A0AV96 593 aaKnown RBP22.47■■□□□ 1.19
TRIM28-202ENST00000341753 DFFAO00273 331 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 GPR32O75388 356 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 ALDOCP09972 364 aaKnown RBP22.47■■□□□ 1.19
TRIM28-202ENST00000341753 HSPA8P11142 646 aaKnown RBP22.47■■□□□ 1.19
TRIM28-202ENST00000341753 ZBTB6Q15916 424 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 VPS26BQ4G0F5 336 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 B3GALNT2Q8NCR0 500 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 APPL2Q8NEU8 664 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 EXT2Q93063 718 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 HDAC11Q96DB2 347 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 PLEKHA5Q9HAU0 1116 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 TRHDEQ9UKU6 1024 aa22.47■■□□□ 1.19
TRIM28-202ENST00000341753 DHRS12A0PJE2 317 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 COQ9O75208 318 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 ZBTB11O95625 1053 aaPredicted RBP22.46■■□□□ 1.19
TRIM28-202ENST00000341753 NCAM1P13591 858 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 MYF6P23409 242 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 HMOX2P30519 316 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 ARCN1P48444 511 aaKnown RBP22.46■■□□□ 1.19
TRIM28-202ENST00000341753 PLCL1Q15111 1095 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 UGP2Q16851 508 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 PCID2Q5JVF3 399 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 CAMK1DQ8IU85 385 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 CMTR2Q8IYT2 770 aaKnown RBP22.46■■□□□ 1.19
TRIM28-202ENST00000341753 TBC1D15Q8TC07 691 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 TRPC4APQ8TEL6 797 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 DUS3LQ96G46 650 aaKnown RBP22.46■■□□□ 1.19
TRIM28-202ENST00000341753 INIPQ9NRY2 104 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 PMPCBO75439 489 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 UGT1A1P22309 533 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 UGT1A4P22310 534 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 UGT1A3P35503 534 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 UGT1A5P35504 534 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 PFKPQ01813 784 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 SEMA3BQ13214 749 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 TGFBIQ15582 683 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 FAM45BPQ6NSW5 357 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 SLC27A1Q6PCB7 646 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 BNIPLQ7Z465 357 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 IFNEQ86WN2 208 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 FAM45AQ8TCE6 357 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 STON2Q8WXE9 905 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 TBL1YQ9BQ87 522 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 TINF2Q9BSI4 451 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 DUSP16Q9BY84 665 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 TRAF6Q9Y4K3 522 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 V9GYQ6 96 aa22.46■■□□□ 1.19
TRIM28-202ENST00000341753 CLOCKO15516 846 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 IPO13O94829 963 aaKnown RBP22.45■■□□□ 1.19
TRIM28-202ENST00000341753 SMIM10L2AP0DMW4 78 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 SMIM10L2BP0DMW5 78 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 CPB1P15086 417 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 CD151P48509 253 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 CDH13P55290 713 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 GALNT2Q10471 571 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 TECRLQ5HYJ1 363 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 RNF168Q8IYW5 571 aaPredicted RBP22.45■■□□□ 1.19
TRIM28-202ENST00000341753 EMID1Q96A84 441 aaPredicted RBP22.45■■□□□ 1.19
TRIM28-202ENST00000341753 CCM2LQ9NUG4 571 aaPredicted RBP22.45■■□□□ 1.19
TRIM28-202ENST00000341753 ARMC1Q9NVT9 282 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 SELENONQ9NZV5 590 aa22.45■■□□□ 1.19
TRIM28-202ENST00000341753 PIN4Q9Y237 131 aaKnown RBP22.45■■□□□ 1.19
TRIM28-202ENST00000341753 COL1A2P08123 1366 aa22.45■■□□□ 1.18
TRIM28-202ENST00000341753 SCN4AP35499 1836 aa22.45■■□□□ 1.18
TRIM28-202ENST00000341753 EI24O14681 340 aa22.45■■□□□ 1.18
TRIM28-202ENST00000341753 MTHFD1P11586 935 aaKnown RBP22.45■■□□□ 1.18
TRIM28-202ENST00000341753 SOX4Q06945 474 aaPredicted RBP22.45■■□□□ 1.18
TRIM28-202ENST00000341753 C8orf82Q6P1X6 216 aaPredicted RBP22.45■■□□□ 1.18
TRIM28-202ENST00000341753 GPRIN1Q7Z2K8 1008 aa22.45■■□□□ 1.18
TRIM28-202ENST00000341753 MAP10Q9P2G4 905 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms