RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 HES6Q96HZ4 224 aa14.09□□□□□ -0.15
LIMS1-201ENST00000332345 BMFQ96LC9 184 aa14.09□□□□□ -0.15
LIMS1-201ENST00000332345 AGAP3Q96P47 875 aa14.09□□□□□ -0.15
LIMS1-201ENST00000332345 ELF4Q99607 663 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-201ENST00000332345 IL21RQ9HBE5 538 aa14.09□□□□□ -0.15
LIMS1-201ENST00000332345 LZTFL1Q9NQ48 299 aa14.09□□□□□ -0.15
LIMS1-201ENST00000332345 CA5BQ9Y2D0 317 aa14.09□□□□□ -0.15
LIMS1-201ENST00000332345 PPIL1Q9Y3C6 166 aa14.09□□□□□ -0.15
LIMS1-201ENST00000332345 TMEM131Q92545 1883 aa14.09□□□□□ -0.15
LIMS1-201ENST00000332345 CNOT1A5YKK6 2376 aaKnown RBP14.09□□□□□ -0.15
LIMS1-201ENST00000332345 GOLGA6L9A6NEM1 432 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 H0Y8X5 98 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 H7C0C1 242 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 TOR1BO14657 336 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 YKT6O15498 198 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 PRKCGP05129 697 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 ELFN1P0C7U0 828 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 C6P13671 934 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 CEACAM1P13688 526 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 CD59P13987 128 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 RABIFP47224 123 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 ATP5OP48047 213 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 CLDN2P57739 230 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 RPL26P61254 145 aaKnown RBP14.08□□□□□ -0.16
LIMS1-201ENST00000332345 NIPAL4Q0D2K0 466 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 ZBTB17Q13105 803 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 LRRC14Q15048 493 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 PRKD1Q15139 912 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-201ENST00000332345 LIPIQ6XZB0 460 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 USP45Q70EL2 814 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 B4GALNT4Q76KP1 1039 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 DPPA4Q7L190 304 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 ERMP1Q7Z2K6 904 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 HAUS1Q96CS2 278 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 ALS2CR12Q96Q35 445 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 VAT1Q99536 393 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 KLF6Q99612 283 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-201ENST00000332345 SLC25A51Q9H1U9 297 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 KCTD5Q9NXV2 234 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 PACSIN2Q9UNF0 486 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-201ENST00000332345 RPL26L1Q9UNX3 145 aaKnown RBP14.08□□□□□ -0.16
LIMS1-201ENST00000332345 FNDC3AQ9Y2H6 1198 aaKnown RBP14.08□□□□□ -0.16
LIMS1-201ENST00000332345 CAPN6Q9Y6Q1 641 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 LRRK1Q38SD2 2015 aa14.08□□□□□ -0.16
LIMS1-201ENST00000332345 A0A1B0GTQ1 180 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 POM121BA6NF01 834 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 A8MX80 341 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 RAD51BO15315 384 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 DDX3YO15523 660 aaKnown RBP14.07□□□□□ -0.16
LIMS1-201ENST00000332345 FZD6O60353 706 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 ZNF189O75820 626 aaPredicted RBP14.07□□□□□ -0.16
LIMS1-201ENST00000332345 PDHA1P08559 390 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 VIPR1P32241 457 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 CD86P42081 329 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 RXRGP48443 463 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 CCT8P50990 548 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 YPEL5P62699 121 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 SEMG2Q02383 582 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 ARHGEF7Q14155 803 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 AGERQ15109 404 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 PRAMEF14Q5SWL7 426 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 KYAT3Q6YP21 454 aaKnown RBP14.07□□□□□ -0.16
LIMS1-201ENST00000332345 DBX2Q6ZNG2 339 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 GCNT7Q6ZNI0 430 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 PTAR1Q7Z6K3 402 aaPredicted RBP14.07□□□□□ -0.16
LIMS1-201ENST00000332345 PIP4P1Q86T03 277 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 SPATS2Q86XZ4 545 aaKnown RBP14.07□□□□□ -0.16
LIMS1-201ENST00000332345 TTC13Q8NBP0 860 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 OR13H1Q8NG92 308 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 SETD7Q8WTS6 366 aaKnown RBP14.07□□□□□ -0.16
LIMS1-201ENST00000332345 PIH1D2Q8WWB5 315 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 HTR3CQ8WXA8 447 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 IFT43Q96FT9 208 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 IMP4Q96G21 291 aaKnown RBP14.07□□□□□ -0.16
LIMS1-201ENST00000332345 TEKT5Q96M29 485 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 ADGRE3Q9BY15 652 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 GLOD4Q9HC38 313 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 PCDH9Q9HC56 1237 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 B4GALT6Q9UBX8 382 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 TRHDEQ9UKU6 1024 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 DNPEPQ9ULA0 475 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 CHKBQ9Y259 395 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 PPP2R2CQ9Y2T4 447 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 COQ6Q9Y2Z9 468 aa14.07□□□□□ -0.16
LIMS1-201ENST00000332345 TP53BP1Q12888 1972 aaPredicted RBP14.07□□□□□ -0.16
LIMS1-201ENST00000332345 SH3BP5O60239 455 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 PCDHGA12O60330 932 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 KCNK5O95279 499 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 PTPN3P26045 913 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 EIF3EP60228 445 aaKnown RBP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 SKOR1P84550 965 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 OTUD4Q01804 1114 aaKnown RBP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 ZNF211Q13398 564 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 PTK2BQ14289 1009 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 ACOX1Q15067 660 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 NOMO1Q15155 1222 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 RPS6KA1Q15418 735 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 PPM1JQ5JR12 505 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 AADACL2Q6P093 401 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 PID1Q7Z2X4 250 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms