RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 COG5Q9UP83 839 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 TLL2Q9Y6L7 1015 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 SLC25A12O75746 678 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 SERPINA3P01011 423 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 DPYSL3Q14195 570 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 EGFLAMQ63HQ2 1017 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 LPCAT1Q8NF37 534 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 ARPC4-TTLL3A0A0A6YYG9 625 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 CTSKP43235 329 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 TAS2R41P59536 307 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 VMACQ2NL98 169 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 NEPROQ6NW34 567 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 SPATA19Q7Z5L4 167 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 PTAR1Q7Z6K3 402 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-201ENST00000328333 PRKCIP41743 596 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 CBWD6Q4V339 395 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 ANGEL2Q5VTE6 544 aaKnown RBP14.33□□□□□ -0.12
COL7A1-201ENST00000328333 CREB3L1Q96BA8 519 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 KCNIP3Q9Y2W7 256 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 PRKD3O94806 890 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 RB1P06400 928 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 FBXO30Q8TB52 745 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 RBM22Q9NW64 420 aaKnown RBP eCLIP14.33□□□□□ -0.12
COL7A1-201ENST00000328333 RSL1D1O76021 490 aaKnown RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 RHOCP08134 193 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 ANXA5P08758 320 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 TGFB3P10600 412 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 AUHQ13825 339 aaKnown RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 PIK3R6Q5UE93 754 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 ERI1Q8IV48 349 aaKnown RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 SELENOMQ8WWX9 145 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 FUCA2Q9BTY2 467 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CDH22Q9UJ99 828 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 RIIAD1A6NNX1 92 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 STAG3L1P0CL83 205 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 FDPSP14324 419 aaKnown RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 SSTR1P30872 391 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 GALK1P51570 392 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 SNAP47Q5SQN1 464 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 TMC8Q8IU68 726 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 C7orf26Q96N11 449 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 TARS2Q9BW92 718 aaKnown RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CDH19Q9H159 772 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 H6PDO95479 791 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CSGALNACT1Q8TDX6 532 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CAPN10Q9HC96 672 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 IQSEC2Q5JU85 1478 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 H7C2Y5 167 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 PDLIM1O00151 329 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 PDCD5O14737 125 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 IGSF6O95976 241 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CATP04040 527 aaKnown RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CLCN2P51788 898 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 MGAT5BQ3V5L5 792 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 AFTPHQ6ULP2 937 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 IPCEF1Q8WWN9 437 aaPredicted RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 RXFP2Q8WXD0 754 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 MRPS31Q92665 395 aaKnown RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 FAM50BQ9Y247 325 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 MIA3Q5JRA6 1907 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 FADS2P1A8MWK0 482 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 GPR182O15218 404 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 AIREO43918 545 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 NDUFB10O96000 172 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CCNYL3P0C7X3 344 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 AIF1P55008 147 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 PHC1P78364 1004 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 LIPEQ05469 1076 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 UBA3Q8TBC4 463 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 PPP1R16AQ96I34 528 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 TBCDQ9BTW9 1192 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 ELOVL4Q9GZR5 314 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 TOR4AQ9NXH8 423 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 SEC16AO15027 2179 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CSPG5O95196 566 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 IGFBP5P24593 272 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CCR4P51679 360 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CYP4F2P78329 520 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 CYP4F3Q08477 520 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 COLEC11Q9BWP8 271 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 YTHDF1Q9BYJ9 559 aaKnown RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 DNAJC13O75165 2243 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 PSMD11O00231 422 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 NUDT14O95848 222 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 GIT2Q14161 759 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 RHEBQ15382 184 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF697Q5TEC3 545 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 ADNP2Q6IQ32 1131 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 HPS6Q86YV9 775 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 FAM124BQ9H5Z6 455 aaPredicted RBP14.32□□□□□ -0.12
COL7A1-201ENST00000328333 SEMA3GQ9NS98 782 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 FETUBQ9UGM5 382 aa14.32□□□□□ -0.12
COL7A1-201ENST00000328333 PPEF2O14830 753 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 AKAP3O75969 853 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 PRH1P02810 166 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 RORCP51449 518 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 SNAPC2Q13487 334 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 FBXO47Q5MNV8 452 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 TCEA3O75764 348 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 SCNN1BP51168 640 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms